# R Interface to Geochemical Modeling Software

## Documentation for package ‘phreeqc’ version 3.8.7

- DESCRIPTION file.

## Help Pages

phreeqc-package | R interface to the PHREEQC geochemical modeling program.
Amm.dat | The Amm.dat database.
ColdChem.dat | The ColdChem.dat database.
core10.dat | The core10.dat database
ex1 | Example 1-Speciation Calculation
ex10 | Example 10-Aragonite-Strontianite Solid Solution
ex11 | Example 11-Transport and Cation Exchange
ex12 | Example 12-Advective and Diffusive Flux of Heat and Solutes
ex13a | Example 13-Aragonite-Strontianite Solid Solution
ex13b | Example 13-Aragonite-Strontianite Solid Solution
ex13c | Example 13-Aragonite-Strontianite Solid Solution
ex14 | Example 14-Advective Transport, Cation Exchange, Surface Complexation, and Mineral Equilibria
ex15 | Example 15-1D Transport: Kinetic Biodegradation, Cell Growth, and Sorption
ex15.dat | The ex15.dat database
ex16 | Example 16-Inverse Modeling of Sierra Spring Waters
ex17 | Example 17-Inverse Modeling With Evaporation
ex18 | Example 18-Inverse Modeling of the Madison Aquifer
ex19 | Example 19-Modeling Cd+2 Sorption With Linear, Freundlich, and Langmuir Isotherms, and With a Deterministic Distribution of Sorption Sites for Organic Matter, Clay Minerals, and Iron Oxyhydroxides
ex2 | Example 2-Equilibration With Pure Phases
ex20a | Example 20-Distribution of Isotopes Between Water and Calcite
ex20b | Example 20-Distribution of Isotopes Between Water and Calcite
ex21 | Example 21-Modeling Diffusion of HTO, 36Cl-, 22Na+, and Cs+ in a Radial Diffusion Cell
ex22 | Example 22-Modeling Gas Solubilities: CO2 at High Pressures
ex3 | Example 3-Mixing
ex4 | Example 4-Evaporation and Homogeneous Redox Reactions
ex5 | Example 5-Irreversible Reactions
ex6 | Example 6-Reaction-Path Calculations
ex7 | Example 7-Gas-Phase Calculations
ex8 | Example 8-Surface Complexation
ex9 | Example 9-Kinetic Oxidation of Dissolved Ferrous Iron With Oxygen
frezchem.dat | The frezchem.dat database
iso.dat | The iso.dat database.
Kinec.v2.dat | Thermodynamic and rates database from Oelkers and coworkers.
Kinec_v3.dat | Thermodynamic and rates database from Oelkers and coworkers.
llnl.dat | The llnl.dat database.
minteq.dat | The minteq.dat database.
minteq.v4.dat | The minteq.v4.dat database.
phrAccumulateLine | Accumulate line(s) for input to phreeqc.
phrClearAccumulatedLines | Clear the accumulated input buffer.
phreeqc | R interface to the PHREEQC geochemical modeling program.
phreeqc.dat | The phreeqc.dat database
phreeqc_rates.dat | Thermodynamic and rates database
PHREEQC_ThermoddemV1.10_15Dec2020.dat | Thermochemical Database from the BRGM institute (French Geological Survey)
phrGetAccumulatedLines | Retrieve the accumulated input.
phrGetComponentList | Retrieve a list containing the current list of components.
phrGetDumpFileName | Retrieve the name of the dump file.
phrGetDumpFileOn | Retrieve the current value of the dump file switch.
phrGetDumpStrings | Retrieve DUMP strings.
phrGetDumpStringsOn | Retrieve the current value of the dump strings switch.
phrGetErrorFileName | Retrieve the name of the error file.
phrGetErrorFileOn | Retrieve the current value of the error file switch.
phrGetErrorStrings | Retrieve error string messages.
phrGetErrorStringsOn | Retrieve the current value of the error strings switch.
phrGetLogFileName | Retrieve the name of the log file.
phrGetLogFileOn | Retrieve the current value of the log file switch.
phrGetLogStrings | Retrieve log output.
phrGetLogStringsOn | Retrieve the current value of the log strings switch.
phrGetOutputFileName | Retrieve the name of the output file.
phrGetOutputFileOn | Retrieve the current value of the output file switch.
phrGetOutputStrings | Retrieve standard phreeqc output.
phrGetOutputStringsOn | Retrieve the current value of the output strings switch.
phrGetSelectedOutput | Returns the contents of the selected output as a list of data frames.
phrGetSelectedOutputFileName | Retrieve the name of the selected_output file.
phrGetWarningStrings | Retrieve warning messages.
phrLoadDatabase | Load a phreeqc database file
phrLoadDatabaseString | Load a phreeqc database as a string or a list of strings.
phrRunAccumulated | Runs the accumulated input.
phrRunFile | Run phreeqc input file
phrRunString | Runs phreeqc using the given string as input.
phrSetDumpFileName | Set the name of the dump file.
phrSetDumpFileOn | Set the dump file on/off.
phrSetDumpStringsOn | Set dump strings on/off.
phrSetErrorFileName | Set the name of the error file.
phrSetErrorFileOn | Set error file on/off.
phrSetErrorStringsOn | Set error strings on/off.
phrSetLogFileName | Set the name of the log file.
phrSetLogFileOn | Set log file on/off.
phrSetLogStringsOn | Set log strings on/off.
phrSetOutputFileName | Set the name of the output file.
phrSetOutputFileOn | Set output file on/off.
phrSetOutputStringsOn | Set output strings on/off.
phrSetSelectedOutputFileName | Set the name of the selected_output file.
phrSetSelectedOutputFileOn | Set selected_output file on/off.
pitzer.dat | The pitzer.dat database.
sit.dat | The sit.dat database.
stimela.dat | The stimela.dat database.
Tipping_Hurley.dat | The Tipping_Hurley.dat database
wateq4f.dat | The wateq4f.dat database.