ABC                     Parameter estimation with Approximate Bayesian
                        Computation with several targets
cleanData               Import and clean a single file containing data
                        in 'popoolation2' format
cmd2pops                Create SCRM command line for a model with two
                        populations
cmdParallel             Create SCRM command line for a parallel origin
                        scenario
cmdSingle               Create SCRM command line for a single origin
                        scenario
createHeader            Create a header for a _rc file of popoolation2
createParams            Draw parameters from the priors
error_modelSel          Compute error in model selection with
                        Approximate Bayesian Computation
forceLocus              Force the simulations to contain the required
                        number of loci
getmode                 Calculate the mode of a distribution
importContigs           Import multiple files containing data in
                        PoPoolation2 format
index.rejABC            Parameter estimation with Approximate Bayesian
                        Computation using rejection sampling and
                        recording just the index of accepted
                        simulations
limits                  Matrix of prior limits
mergepost               Merge posterior distributions
mode_locfit             Compute mode of a locfit object
modelSelect             Perform model selection with Approximate
                        Bayesian Computation
multipleABC             Parameter estimation with Approximate Bayesian
                        Computation for multiple targets
myparams                Matrix of simulated parameter values
params                  Matrix of simulated parameter values
plot_Posteriors         Plot multiple posterior distributions
plot_errorABC           Prediction error plots for ABC using a list
plot_msel               Plot model misclassification
plot_param              Plot the density estimation of a given
                        parameter
plot_stats              Plot the fit of a summary statistic to the
                        target
plot_weighted           Plot the density estimation of a given
                        parameter
poolSim                 Simulation of Pooled DNA sequencing
poolStats               Compute summary statistics from Pooled DNA
                        sequencing
poststat                Calculate point estimates from the posterior
                        distribution
prepareData             Organize information by contig - for multiple
                        data files
prepareFile             Organize information by contigs - for a single
                        data file
priorsMatrix            Construct matrix of prior limits
rc1                     Data frame with an example of observed data
rc2                     Data frame with an example of observed data
regABC                  Parameter estimation with Approximate Bayesian
                        Computation using local linear regression
rejABC                  Parameter estimation with Approximate Bayesian
                        Computation using rejection sampling
remove_quantileReads    Remove sites using quantiles of the depth of
                        coverage
remove_realReads        Remove sites, according to their coverage, from
                        real data
runSCRM                 Run scrm and obtain genotypes
scaled.migration        Compute scaled migration rates
scaledPrior             Compute scaled migration rate limits
sim_modelSel            Leave-one-out cross validation of model
                        selection
simulationABC           Perform an Approximate Bayesian Computation
                        simulation study
singleABC               Parameter estimation with Approximate Bayesian
                        Computation for a single target
summary_modelSelect     Posterior model probabilities
sumstats                Matrix of summary statistics computed from
                        simulated data
