Age-Depth Modelling using Bayesian Statistics

Documentation for package ‘rbacon’ version 4.0.0

Help Pages

A.modelled	calculate modelled 210Pb
accrate.age	obtain estimated accumulation rates for any age of a core
accrate.age.ghost	plot a core's accumulation rates against calendar time
accrate.age.summary	provide a summary of the estimated accumulation rates for any age of a core
accrate.depth	obtain estimated accumulation rates as for any depth of a core
accrate.depth.ghost	plot modelled accumulation rates against the depths of a core
accrate.depth.summary	provide a summary of the estimated accumulation rates for any depth of a core
accrates.core	provide a summary of the estimated accumulation rates for a range of core depths
add.dates	Add dates to age-depth plots
agedepth	plot an age-depth model
agemodel.it	extract one age-model iteration
ageranges	save age ranges of depth(s)
AgesOfEvents	event probabilities against calendar age
background	calculate probabilities that Pb-210 data have reached background levels
Bacon	main age-depth modelling function
Bacon.Age.d	output all ages for a single depth
Bacon.cleanup	remove files made to produce the current core's age-depth model
Bacon.d.Age	output all depths for a single age
Bacon.hist	calculate age distributions of depths
bacon2clam	translate Bacon .csv files to clam .csv files
Baconvergence	test to identify poorly mixed MCMC runs
Bacon_runs	list the folders present in the current core directory
calib.plot	Plot the dates
clam2bacon	translate clam .csv files to Bacon .csv files
draw.pbmeasured	plot the 210Pb data
draw.pbmodelled	plot the 210Pb data
flux.age.ghost	plot flux rates for proxies
MCMC.diagnostics	test mixing and stationarity of the MCMC run
proxy.ghost	greyscale plot of a proxy against time
scissors	remove the first n iterations
set.initvals	set initial values for the Bacon MCMC run
squeeze	squeeze some depths of a core
stretch	stretch some depths of a core
thinner	thin iterations
tofu	Bacon for vegans