CalcBYprobs             Birth year probabilities
CalcMaxMismatch         Maximum Number of Mismatches
CalcOHLLR               Calculate OH and LLR for a pedigree
CalcPairLL              Calculate Likelihoods for Alternative
                        Relationships
CalcRped                Calculate Pedigree Relatedness
CheckGeno               Check Genotype Matrix
ComparePairs            Compare Pairwise Relationships
Conf_griffin            Example output from estimating confidence
                        probabilities: griffins
DyadCompare             Compare Dyads (DEPRECATED)
ErrToM                  Generate Genotyping Error Matrix
EstConf                 Confidence Probabilities
EstEr                   Estimate genotyping error rate (REMOVED; will
                        be re-implemented)
FieldMums_griffin       Example field-observed mothers: griffins
FindFamilies            Assign Family IDs
GenoConvert             Convert Genotype Data
Geno_HSg5               Example genotype file: 'HSg5'
Geno_griffin            Example genotype file: Griffins
GetAncestors            Get ancestors
GetDescendants          Get descendants
GetLLRAge               LLR-age from Ageprior Matrix
GetMaybeRel             Find Putative Relatives
GetRelM                 Matrix with Pairwise Relationships
Inherit_patterns        Inheritance patterns
LHConvert               Extract Sex and Birth Year from PLINK File
LH_HSg5                 Example life history file: 'HSg5'
LH_griffin              Example life history data: griffins
MakeAgePrior            Age Priors
MaybeRel_griffin        Example output from check for relatives:
                        griffins
MkGenoErrors            Simulate Genotyping Errors
PedCompare              Compare Two Pedigrees
PedPolish               Fix Pedigree
PedStripFID             Back-transform IDs
Ped_HSg5                Example pedigree: 'HSg5'
Ped_griffin             Example pedigree: griffins
PlotAgePrior            Plot Age Priors
PlotPairLL              Plot Pair Log10-Likelihoods
PlotPedComp             Visualise PedCompare Output
PlotRelPairs            Plot Pairwise Relationships
PlotSeqSum              Plot Summary Overview of sequoia Output
SeqOUT_HSg5             Example output from pedigree inference: 'HSg5'
SeqOUT_griffin          Example output from pedigree inference:
                        griffins
SimGeno                 Simulate Genotypes
SimGeno_example         Example genotype file: 'HSg5'
SnpStats                SNP Summary Statistics
SummarySeq              Summarise Sequoia Output or Pedigree
getAssignCat            Assignability of Reference Pedigree
getGenerations          Count Generations
sequoia                 Pedigree Reconstruction
writeColumns            Write Data to a File Column-wise
writeSeq                Write Sequoia Output to File
