# Observational Health Data Sciences and Informatics Report Generator

## Documentation for package ‘OhdsiReportGenerator’ version 1.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

OhdsiReportGenerator-package | OhdsiReportGenerator
addTarColumn | addTarColumn
formatBinaryCovariateName | formatBinaryCovariateName
generateFullReport | generateFullReport
generatePresentation | generatePresentation
generatePresentationMultiple | generatePresentationMultiple
getBinaryCaseSeries | A function to extract case series characterization results
getBinaryRiskFactors | A function to extract non-case and case binary characterization results
getCaseBinaryFeatures | Extract aggregate statistics of binary feature analysis IDs of interest for cases
getCaseContinuousFeatures | Extract aggregate statistics of continuous feature analysis IDs of interest for targets
getCaseCounts | Extract the outcome cohort counts result
getCharacterizationDemographics | Extract the binary age groups for the cases and targets
getCmDiagnosticsData | Extract the cohort method diagostic results
getCMEstimation | Extract the cohort method results
getCmMetaEstimation | Extract the cohort method meta analysis results
getCohortDefinitions | Extract the cohort definition details
getCohortSubsetDefinitions | Extract the cohort subset definition details
getContinuousCaseSeries | A function to extract case series continuous feature characterization results
getContinuousRiskFactors | A function to extract non-case and case continuous characterization results
getDechallengeRechallenge | Extract the dechallenge rechallenge results
getExampleConnectionDetails | create a connection detail for an example OHDSI results database
getIncidenceRates | Extract the cohort incidence result
getPredictionCohorts | Extract a complete set of cohorts used in the prediction results
getPredictionDiagnostics | Extract the model design diagnostics for a specific development database
getPredictionDiagnosticTable | Extract specific diagnostic table
getPredictionHyperParamSearch | Extract hyper parameters details
getPredictionIntercept | Extract model interception (for logistic regression)
getPredictionModelDesigns | Extract the model designs and aggregate performances for the prediction results
getPredictionPerformances | Extract the model performances
getPredictionPerformanceTable | Extract specific results table
getPredictionTopPredictors | Extract the top N predictors per model
getSccsDiagnosticsData | Extract the self controlled case series (sccs) diagostic results
getSccsEstimation | Extract the self controlled case series (sccs) results
getSccsMetaEstimation | Extract the self controlled case series (sccs) meta analysis results
getTargetBinaryFeatures | Extract aggregate statistics of binary feature analysis IDs of interest for targets
getTargetContinuousFeatures | Extract aggregate statistics of continuous feature analysis IDs of interest for targets
getTargetCounts | Extract the target cohort counts result
getTimeToEvent | Extract the time to event result
kableDark | output a nicely formatted html table
OhdsiReportGenerator | OhdsiReportGenerator
plotAgeDistributions | Plots the age distributions using the binary age groups
plotCmEstimates | Plots the cohort method results for one analysis
plotSccsEstimates | Plots the self controlled case series results for one analysis
plotSexDistributions | Plots the sex distributions using the sex features
printReactable | prints a reactable in a quarto document
processCohorts | Extract the cohort parents and children cohorts (cohorts derieved from the parent cohort)
removeSpaces | removeSpaces