Fast and Efficient (Automated) Analysis of Sparse Omics Data

Documentation for package ‘OmicFlow’ version 1.5.0

bray	Compute Bray-Curtis Dissimilarity from a Dense or Sparse Matrix.
canberra	Compute Canberra Dissimilarity from a from a Dense or Sparse Matrix.
colormap	Color map of a variable
column_exists	Checks if column exists in table
composition_plot	Compositional plot
cosine	Compute Cosine Dissimilarity from a Dense or Sparse Matrix.
diversity	Sparse implementation of Alpha Diversity Metrics
diversity_plot	Diversity plot
foldchange	Computes Log2(A) - Log2(B) Fold Change of (non-) paired data.
hill_taxa	Sparse implementation of Hill numbers
jaccard	Compute Jaccard Dissimilarity from a Dense or Sparse Matrix.
jsd	Compute Jensen-Shannon Divergence from a Dense or Sparse Matrix.
manhattan	Compute Manhattan Dissimilarity from a Dense or Sparse Matrix.
matrix_to_dtable	Converting a Matrix to data.table
metagenomics	Sub-class metagenomics
omics	Abstract omics class
ordination_plot	Ordination plot
pairwise_adonis	Pairwise adonis2 (PERMANOVA) computation
pairwise_anosim	Pairwise anosim (ANOSIM) computation
plot_pairwise_stats	Create pairwise stats plot
proteomics	Sub-class proteomics
unifrac	Compute UniFrac Dissimilarity from a Dense or Sparse Matrix.
volcano_plot	Volcano plot