Package: bclogit
Title: Conditional Logistic Regression
Version: 1.0
Authors@R: c(
    person("Adam", "Kapelner", email = "kapelner@qc.cuny.edu", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-5985-6792")),
    person("Jacob", "Tennenbaum", email = "Jacob.Tennenbaum51@qmail.cuny.edu", role = c("aut"), comment = c(ORCID = "0009-0006-1408-5035"))
    )
Author: Adam Kapelner [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5985-6792>),
  Jacob Tennenbaum [aut] (ORCID: <https://orcid.org/0009-0006-1408-5035>)
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Description: Performs inference for Bayesian conditional logistic regression with informative priors built from the concordant pair data. We include many options to build the priors. And we include many options during the inference step for estimation, testing and confidence set creation. For details, see Kapelner and Tennenbaum (2026) ``Improved Conditional Logistic Regression using Information in Concordant Pairs with Software'' <doi:10.48550/arXiv.2602.08212>.
SystemRequirements: GNU make
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.0), Rcpp (>= 1.0.14)
Imports: checkmate, coda, fastLogisticRegressionWrap, geepack, glmmTMB,
        methods, RcppParallel (>= 5.0.1), rstan (>= 2.18.1), rstantools
        (>= 2.6.0)
Suggests: testthat (>= 3.0.0), survival, ggdist, data.table
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        RcppParallel (>= 5.0.1), rstan (>= 2.18.1), StanHeaders (>=
        2.18.0)
URL: https://github.com/Tennenbaum-J/bclogit_package_and_paper_repo
BugReports: https://github.com/Tennenbaum-J/bclogit_package_and_paper_repo/issues
RoxygenNote: 7.3.3
Biarch: true
NeedsCompilation: yes
Packaged: 2026-02-20 00:56:31 UTC; kapelner
Repository: CRAN
Date/Publication: 2026-02-25 10:00:14 UTC
Built: R 4.5.2; x86_64-w64-mingw32; 2026-02-27 00:51:16 UTC; windows
Archs: x64
