51ea363207d5ea414110813b46bc2f36 *DESCRIPTION
42f42c7521e2e45c069e93df7c15cbab *NAMESPACE
b71f985c96f714efb4f2e59675db53bc *NEWS.md
3cbc70baba6f4ad11d4054e0353fb394 *R/RcppExports.R
c436f9976d36eeaffb2fb9a2c2226402 *R/S3methods.R
60f07a9d1e572ddaf738143b7a0dcad4 *R/algo_estimate_RTMB.R
ff648deaf2bc02f20260656a613fcf77 *R/algo_estimate_TMB.R
fea19c7fa7f6d3c7018c80db0f506684 *R/algo_filter.R
186fc6639302f84331b175ed427aa703 *R/algo_predict.R
9331fa9d94b21ed59bc2496430ecfb02 *R/algo_simulate.R
1293a4558d6550cb4e4b3fc7870cc35d *R/algo_utils_kalman_funs.R
19219110fee5e9a9858c3492f31f543e *R/algo_utils_misc_funs.R
e1025370977233570e7417c36cd0cfd4 *R/algo_utils_return_computations.R
fb91f8404123823dfbf7b02e27dd95d2 *R/algo_utils_strings.R
fcc05c2cc11bd7092f522cb265a7485d *R/ctsmTMB.R
b4c7c995702733d44344cba45a7a6616 *R/method_estimate.R
eeb0e06899273c34351d8e828ef07d99 *R/method_filter.R
27efcebbb52862ab2dc5e09d5d732a02 *R/method_predict.R
a62ff0d22d9ab7334bdaad169181246e *R/method_simulate.R
347f7656444c319b6467c35decfb4584 *R/method_smooth.R
2fb2fba45911a58794599dbec522e063 *R/model_builders.R
28af072818822b41c81bf9fd55d963d8 *R/model_checkers.R
be271149a5b9737be40edca9229b6b4d *R/model_cpp_compilers.R
474b9fdd353398f233cb3ee2858145f9 *R/model_cpp_writers.R
fbb8fc672fc1450d90561eac65f8c206 *R/model_data_setters.R
ac02fa41e974c9244113e2031b52373b *R/model_drules_and_extrafuns.R
a34cbc2f67d6d69f1f9b551db19e7f31 *R/model_flags.R
2f05c48332d5765b29a30c4c8cee86d7 *R/model_rebuilders.R
dcbff3b60c4c886c54ffdf8865d8b326 *R/model_transformations.R
ec35d0687b2bd66f04ac56b67aee4487 *R/model_utils.R
e567471387af81c35d0be4f563614651 *R/utils.R
4a590d494bcbb727905830012bb642e2 *R/zzz_data.R
64debb753fba18de42045a00730276dc *R/zzz_dynlib.R
c43dcb8da91877420eb7c787d66c791f *R/zzz_ggfortify_ggcpgram.R
04a17aa5fde7de9152a67b69b5581477 *R/zzz_globalvariables.R
223635c3a9adcd6047caa20f7b9e9050 *R/zzz_imports.R
b47d4c71e0fa16030419d91fbdbbcbad *R/zzz_predefined_models.R
89b95377317322e15ff74bb4c740bda2 *R/zzzz_test_rcpp_estimate.R
e4c341e2da30c09f91d1344aad5cd983 *README.md
649cdce824b164d9c9d34fe8ac3abfe5 *build/vignette.rds
fc29eadcd2ecf79615a27e9fc056a88c *data/EstimateReferenceData.rda
1bc579e5b5cf85380d795fe9adbd8f2e *data/Ornstein.rda
aa54f0436ba233da3d47f0081af49922 *data/Ornstein2D.rda
1710231fdee23dee9bde5111aaae5166 *data/OutputReferenceData.rda
ad1a01d3713e849184a32072a1601d3c *inst/CITATION
3658db89ab308066b52fef3f20a30f0a *inst/COPYRIGHTS
60edbd99f8c8cf0dba5ced6387f0d21f *inst/doc/ctsmTMB.R
490b9ce8ed8e918915c281a19c649b21 *inst/doc/ctsmTMB.Rmd
e16da122f0d531c4b03100a959226a5b *inst/doc/ctsmTMB.html
6881285482f9f55b39a3777e8ca652c1 *inst/doc/estimate.R
28241a8788481b864c7bbf9cc996f8f1 *inst/doc/estimate.Rmd
89aa529431ff1dbd13d1732403b5b0d2 *inst/doc/estimate.html
d8b203303eee512971b279782a651dc2 *inst/doc/extended_kalman_filter.Rmd
8c71896879946a8248351fb18ae7c953 *inst/doc/extended_kalman_filter.html
456e496ad461025d1c24c1fc40aa69bd *inst/doc/laplace_approx.Rmd
b1a6053b8d7fb4dacfc81bb991f9b9c8 *inst/doc/laplace_approx.html
f7f4aeec287c15b2de5e53dcc10881f6 *inst/doc/linear_kalman_filter.Rmd
021933afe7d2c749fb73d21f26d60526 *inst/doc/linear_kalman_filter.html
e35eb09033e699c6074cf125bbb6a822 *inst/doc/observation_equations.R
9622d9c452b29f9899c75999327e1fcf *inst/doc/observation_equations.Rmd
7a2932f8f757dcd6b6fb8b065802eb08 *inst/doc/observation_equations.html
b1b20ee6d57872a793f5d4491cd8af5f *inst/doc/predict.R
66e9f181ace411ce0f3b2cc4b12db046 *inst/doc/predict.Rmd
1ea1734a9773a321c33b407111a20517 *inst/doc/predict.html
472008fdd4bf5505cee1dd15a3ce3d37 *inst/doc/simulate.R
4fd861bac410a8d92ba6a917e357fcc0 *inst/doc/simulate.Rmd
e2ab1c1814fc3387cbc9258762de9b61 *inst/doc/simulate.html
c20154f54986b9cf24bf19a5ae5c8192 *inst/doc/unscented_kalman_filter.Rmd
d49c4f307c63c426abd66cc958c212b5 *inst/doc/unscented_kalman_filter.html
49ea3db42c2abdcc749f3621e9a4feb4 *inst/doc/using_another_optimizer.R
66885a6f26dd44ab3db552f12a4ec178 *inst/doc/using_another_optimizer.Rmd
c6e06295d065e85f2be2a4b85b4e78f1 *inst/doc/using_another_optimizer.html
f65db69e7d504d9159d0f10bf6f9a1fe *inst/include/ctsmTMB.h
816746cad663be1bffe7ea431b20587e *inst/include/template_ekf.h
4a5ce3719dc8e66796bdf8d444ae7e44 *inst/include/template_lkf.h
ae0861efa29d35a6d6d7d5207e30f05a *inst/include/template_ukf.h
fe0ef27a00458648dedf3ccff0340230 *inst/include/template_user_functions.h
724c8b5147a7daf6a45503ad32f470aa *man/EstimateReferenceData.Rd
eda5dd8621699c22ab6bbbdaf9add319 *man/Ornstein.Rd
1825c5c776cd256ca264b1e8370adf88 *man/Ornstein2D.Rd
11c678646396678eb5d9563e83f9d9a8 *man/OutputReferenceData.Rd
2310efdb08f39048d4a751bdb91354bf *man/create.Ornstein1D.model.Rd
1471136ca96dbb5f5d74dd123c26cdd3 *man/create.Ornstein2D.model.Rd
c704fae7397c31390109783067d48e8e *man/ctsmTMB.Rd
cedb901572041d1923d404a6a2d54f9d *man/figures/logo.png
fd18c9883874b98c5dc0b9d1e33ad86a *man/newModel.Rd
df28d281d6fb40e9d149f2e58eaf6f92 *man/plot.ctsmTMB.fit.Rd
1e47d16232389e2b5ea329afe92e8229 *man/plot.ctsmTMB.pred.Rd
6f23866abe3556698fa39b89c0eb1c06 *man/plot.ctsmTMB.profile.Rd
50b7a7ccc841f4cd6a82217501b4f648 *man/print.ctsmTMB.Rd
cd46bc043f091414f883cb722c8d9af2 *man/print.ctsmTMB.fit.Rd
5983873cdf1ba8ad0a436e8482cbad0e *man/profile.ctsmTMB.fit.Rd
3b8edb8166e78b88eca55503889173a6 *man/summary.ctsmTMB.fit.Rd
164b7d6e554d2c82eb053c88e5a4b682 *src/Makevars
164b7d6e554d2c82eb053c88e5a4b682 *src/Makevars.win
aba0a3d55b0ef4f254c6219c0d81ffd5 *src/RcppExports.cpp
e32aebcb4f850c4f7a7b249706a11d1d *src/ekf_methods.cpp
85ec60aaff0bbc2ea4e59f84db9874f7 *src/extra_utils.h
7389bff0b6accc43b2f15cd7f334bfee *src/filter_functions.cpp
b482086f94a6733200a47b0e9c13ac9e *src/function_typedefs.h
4641e9f5776b53b413f0fb25b32d807f *src/helpers_ukf.h
35e9ac86c8fdb14fee6e94c3838e9643 *src/lkf_methods.cpp
f9ac97563db44747ddb515ea8b094569 *src/misc_helpers.h
d45770449d7f09a51e82fbd91060a69e *src/ode_solvers.h
88eb036a40516a543471e9d6a589c8ad *src/pointer_helpers.cpp
e9ad9a7c7dd5b6f978f45a4454422c42 *src/predict_functions.cpp
c9e61f205e90d935c8fbe2b12bb0c331 *src/sde_solvers.h
e22c0f4658dcd9cea9cd46c26ce419b3 *src/simulate_functions.cpp
f2e30c642ac7aed813275837cedc6620 *src/ukf_methods.cpp
0197bdbcabe45d0e1ed414bcab01affb *src/ziggurat_seeder.h
a373e8d665993da1869b9110b87b83e5 *tests/testthat.R
0ba2722f33f7e67e380715bc5e42d93c *tests/testthat/test-estimate.R
64d9899d2f2f221c26b91a17058df064 *tests/testthat/test-filter.R
593040c90155cd57cbcecb82e764d6e7 *tests/testthat/test-likelihood.R
a49c7befe0db66e053c0127a572f81da *tests/testthat/test-parameters.R
5d94f9ad47d93f65a48d7b94a57a3dc8 *tests/testthat/test-predict.R
85407b4f129fbcff43a8121e32060895 *tests/testthat/test-simulate.R
9cb1bc776d38eb80a2ce996be4185754 *tests/testthat/test-smooth.R
ef135e0756e1ac6572f12fc1410ef7d5 *tests/testthat/test_estimate_against_reference.R
b7abf04ce5f1608fdeb5d7f8c4b04172 *tests/testthat/test_filter_predict_simulate_against_reference.R
490b9ce8ed8e918915c281a19c649b21 *vignettes/ctsmTMB.Rmd
28241a8788481b864c7bbf9cc996f8f1 *vignettes/estimate.Rmd
d8b203303eee512971b279782a651dc2 *vignettes/extended_kalman_filter.Rmd
456e496ad461025d1c24c1fc40aa69bd *vignettes/laplace_approx.Rmd
f7f4aeec287c15b2de5e53dcc10881f6 *vignettes/linear_kalman_filter.Rmd
9622d9c452b29f9899c75999327e1fcf *vignettes/observation_equations.Rmd
66e9f181ace411ce0f3b2cc4b12db046 *vignettes/predict.Rmd
4fd861bac410a8d92ba6a917e357fcc0 *vignettes/simulate.Rmd
c20154f54986b9cf24bf19a5ae5c8192 *vignettes/unscented_kalman_filter.Rmd
66885a6f26dd44ab3db552f12a4ec178 *vignettes/using_another_optimizer.Rmd
