fe80a0ea1be4571aba3326d3d30f81c6 *DESCRIPTION
89cf22b2cdb106ccf726ee675cbf3fc4 *NAMESPACE
4cefb4a639b6571d08935b89943cedd5 *NEWS.md
df772f36b09f6529a3ed6831e5d4d3a2 *R/00-AllClasses.R
4b311bb620bab572eaeb20c87f2d6a85 *R/AllGenerics.R
d76dabf2c30d17921c66d34148f222be *R/RcppExports.R
d1f14961be79d1e70973c5b93a579903 *R/accessor.R
9ddd4bc845e236d7a6b7f7b91ffb08c4 *R/bayes_enrich.R
81a7429df0369cf88ab90a6420a9d357 *R/converters.R
58894eb92e9738de0661004cb5c93106 *R/deseq2.R
48eccd24b6aeb375725dba6cbd4bc1ee *R/dsea_pathway.R
1f7b4e1377524d8a8e0161cf4a1de515 *R/enrichit-package.R
c75d5af62847fc2e1806f8b4c137c04e *R/gsea.R
dd01935cc91c42a71141fa94cb1c74fc *R/gseaScores.R
1104a6e063d535ac965da96c5802162c *R/gsfilter.R
f4a9163731300a14827494799dc63aee *R/mnsea.R
8a2bee85da8a43c72419bbad1f256fd1 *R/mnsea_contribution.R
c40d326e68b1e6027c21eb1adc7ff567 *R/mnsea_subnetwork.R
2ed39a2305333f3136c9b316bee4d66f *R/multi_omics.R
6021339034dd80808f2633545c541ca7 *R/nsea.R
1d6bdca724a6e6ce72b8254df3d8bd66 *R/omics_contribution.R
f0c3f116e31c4a99ed4983dbecc1c9e0 *R/ora.R
9e7bf5948b835154af6431c660549623 *R/ora_gson.R
05e9c11d17af13f6c67fc793339c49c3 *R/print.R
5d81eeceb0c69d4e991bc173f163e139 *R/setReadable.R
4e311d0cb97ba5a3d372f7c041f974eb *R/utilities.R
58a39bdf3868f498c19d54848bf4d3ad *README.md
21c9401b8c07f38d762ade4612fc4ffe *build/partial.rdb
31aff434bb9ffc181ae21fa0ad2d1713 *man/EXTID2NAME.Rd
4d9ac221fc627d01f07744b135d2d5fa *man/aggregate_enrichment.Rd
aa1fd39b3605e7121f756e888ead319a *man/aggregate_omics.Rd
04205fd8c21230dc1e87347f7623b060 *man/as_enrichResult.Rd
cc8cd93a441ffe24745d603d6d31e95b *man/as_genes.Rd
2675d5baad343af3c90f96bd9ec12d99 *man/as_gseaResult.Rd
68fd5526b37fea8339368f45f9960e59 *man/as_ranked.Rd
e870d7cb06f13155d5ffbd4908f50a84 *man/bayes_enrich.Rd
dad79b50fd9176189c029a52e6393e1e *man/bayes_summary.Rd
427da8c5b26c47cb0b301fc70d812066 *man/classify_omics_pattern.Rd
01ea244fda317c3ed1e462fa9267a45a *man/collapse_multilayer_scores.Rd
8c0bc73fc16768c0a7abf081129793ef *man/compareClusterResult-class.Rd
1e00f128364af4d2f05e0e431a3c096e *man/dsea.Rd
fe1263d4b031848a5640a9c42037dcc1 *man/enrichResult-class.Rd
44e003cff679825628829ea8080b91e1 *man/enrichit-package.Rd
dc42827020955c83421977259850da26 *man/enrichit_params.Rd
b8fab96c3e7941cd0e046c22fec1024a *man/extract_mnsea_subnetwork.Rd
5755e37ef3bcf0c66cd04e85d899406a *man/geneID.Rd
bbe0cbc7022cdea7f514a2b01abe0fe7 *man/geneInCategory.Rd
4b6baa2e2d6dc4164713cb37ac1addeb *man/get_mnsea_contribution.Rd
a59682c56f26864d371d1c38e14515db *man/get_omics_contribution.Rd
2c4ea69ece0e0f407966674744900e92 *man/gsea.Rd
c01a59b11ef5391e2b57abbf7f81d084 *man/gseaResult-class.Rd
1707f84bf88c534d7c2c19472ef475c5 *man/gseaScores.Rd
b1137b6814484a7995b82ba0ad34d87d *man/gsea_gson.Rd
93a008cb5f7d6addf7bebc76ff3f9b2c *man/gsea_leading_edge_details.Rd
38ed12a59a9c333f8b9b5cb695c16f20 *man/gsfilter.Rd
7c2967dca8d39e388e54bd96b1d19f67 *man/harmonize_ids.Rd
4f9faefbcb4d33ffef71694a7507ccfd *man/mnsea.Rd
f8880999efd3a66c771834d7ed3e48a1 *man/mnseaResult-class.Rd
d12f7883851307f6c3d084a97579cf9f *man/mnsea_gson.Rd
ad3b80a221f0d593cf68cbabc5a416c0 *man/nsea.Rd
6cde331c401964d8e138609734b34a2a *man/nseaResult-class.Rd
c064191dd9e39860968cf67bc9c79c0d *man/nsea_gson.Rd
94fc5ed4dff6cc767e9e83bc044c52b4 *man/ora.Rd
e01557bf15beefab44776aec0b54e0c4 *man/ora_gson.Rd
c2a922fe2eb0772c5d0e8795bfa2a9f6 *man/prepare_multilayer_network.Rd
c33746b1133313f403c5387417df3c14 *man/prepare_network.Rd
718b8f9cdfb75522c6693dd70470a129 *man/propagate_multilayer.Rd
77deda36be5805e1c4496ce9362c6b80 *man/select_features_for_ora.Rd
ba23999379a151ddae7a70db54b9e75a *man/setReadable.Rd
153baf5c3f007b8a9e9c5e0188d101de *man/show-methods.Rd
52db20d5e7f1f6220b45a1f6d3acd2fb *man/ssgsea_scores.Rd
e1f02897eb9ca6340479673af85bd6b2 *man/summary-methods.Rd
b1cf3938c6176e361017ce3944ed267b *src/RcppExports.cpp
59804a04f21bbd629bc06e8dc32a7d4b *src/enrichit.cpp
14ae1b07a1b489adfb661d7b9f2a619f *src/enrichit.h
4cae714b641eac247695b86c4054a765 *src/esCalculation.cpp
aa9c061c8d8f40f49e28f7cb17c4e6e9 *src/esCalculation.h
142b4f28e4e383bd74536599bb8f4bdf *src/gsea.cpp
3ea1ff9387f9990173e23094ce4e3fd3 *src/gsea_multilevel.cpp
08983688836774363c5df3e988c328a4 *src/gsea_multilevel.h
c277f0f995f74e162b9964e5a4672500 *src/gsea_multilevel_util.cpp
ff4c18584217a57e0872644eca828609 *src/gsea_multilevel_util.h
cd8b0d93680f150fc112c02c5a256785 *src/gsea_scores.cpp
fd45ae399f4180fc518b63155f337b5b *src/nsea.cpp
9616c1e5b831d5b3a0ee1859e2b648db *tests/testthat.R
de42e8315415a69880756b4d315cab99 *tests/testthat/test-accessors.R
1fd12f28b26b77b25cd94dbd721b8ebf *tests/testthat/test-bayes-enrich.R
2a2d2eba9ac20d8ce524362723bd4d47 *tests/testthat/test-converters.R
7c2cb186d1d3e4096fbf746d0ec75d06 *tests/testthat/test-deseq2.R
127bb313f1dae43dcfeec98a87b4f714 *tests/testthat/test-dsea-pathway.R
f4438b76eb6a51a0baaca0eb05e29f01 *tests/testthat/test-filter-gene-sets.R
1dc6032fec6e4abd384398c8f1286c21 *tests/testthat/test-gsea-edge-guards.R
a3f8727643a0aeaa4ae26c474fbe23cb *tests/testthat/test-gsea.R
b257d65f7ecd17065554c9b30d1bb57c *tests/testthat/test-gson-helpers.R
72bd2a7dcd77024235fcae499bdd34f9 *tests/testthat/test-mnsea.R
90fc8c50cc85c5fd7260b9ef44b2991b *tests/testthat/test-multi-omics.R
fb5ba977805f529e4cd3a1a0cb89d13a *tests/testthat/test-nsea.R
306f199871935f3cf10378f64dffc85d *tests/testthat/test-ora.R
9c1e56ad610704c0c28c27a468d413c3 *tests/testthat/test-qvalue-cutoff.R
a3ea65b28686cd289ecf191e9e71bc14 *tests/testthat/test-qvalue.R
