CRAN Package Check Results for Package BIOMASS

Last updated on 2025-09-04 05:50:48 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	2.2.4	25.43	352.75	378.18	OK
r-devel-linux-x86_64-debian-gcc	2.2.4	18.43	216.41	234.84	ERROR
r-devel-linux-x86_64-fedora-clang	2.2.4			619.28	OK
r-devel-linux-x86_64-fedora-gcc	2.2.4			576.01	OK
r-devel-windows-x86_64	2.2.4	28.00	242.00	270.00	OK	--no-vignettes
r-patched-linux-x86_64	2.2.4	25.44	326.53	351.97	OK
r-release-linux-x86_64	2.2.4	26.75	321.78	348.53	OK
r-release-macos-arm64	2.2.4			92.00	OK
r-release-macos-x86_64	2.2.4			362.00	OK
r-release-windows-x86_64	2.2.4	29.00	245.00	274.00	OK	--no-vignettes
r-oldrel-macos-arm64	2.2.4			161.00	OK
r-oldrel-macos-x86_64	2.2.4			342.00	OK
r-oldrel-windows-x86_64	2.2.4	41.00	319.00	360.00	OK	--no-vignettes

Check Details

Version: 2.2.4
Check: tests
Result: ERROR Running ‘testthat.R’ [20s/113s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(BIOMASS) For more information on using BIOMASS, visit https://umr-amap.github.io/BIOMASS Using temporary cache It is recommended to use a permanent cache to avoid to re-download files on each session. See function createCache() or BIOMASS.cache option. > > test_check("BIOMASS") NULL [ FAIL 3 | WARN 0 | SKIP 9 | PASS 450 ] ══ Skipped tests (9) ═══════════════════════════════════════════════════════════ • On CRAN (9): 'test-AGBmonteCarlo.R:153:3', 'test-check_coord_plot.R:106:3', 'test-check_coord_plot.R:131:3', 'test-computeAGB.R:43:3', 'test-correctTaxo.R:5:3', 'test-modelHD.R:120:3', 'test-retrieveH.R:36:3', 'test-small_function.R:22:3', 'test-subplot_summary.R:36:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-small_function.R:42:3'): getBioclimParam ─────────────────────── Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "Failed to perform HTTP request.", trace = structure(list(call = list(getBioclimParam(coord), rast(cacheManager("bio4.bil")), cacheManager("bio4.bil"), httr2::req_perform(req), handle_resp(req, resp, error_call = error_call), cnd_signal(resp)), parent = c(0L, 1L, 1L, 3L, 4L, 5L), visible = c(TRUE, TRUE, TRUE, TRUE, FALSE, FALSE), namespace = c("BIOMASS", "terra", "BIOMASS", "httr2", "httr2", "rlang"), scope = c("::", "::", "::", "::", ":::", "::")), row.names = c(NA, -6L ), version = 2L, class = c("rlang_trace", "rlib_trace", "tbl", "data.frame")), parent = structure(list(message = "Timeout was reached [github.com]:\nResolving timed out after 10000 milliseconds", call = curl::curl_fetch_memory(url, handle)), class = c("curl_error_operation_timedout", "curl_error", "error", "condition")), call = httr2::req_perform(req), request = structure(list(url = "https://github.com/umr-amap/BIOMASS/raw/master/data-raw/climate_variable/wc2-5.zip", method = NULL, headers = list(), body = NULL, fields = list(), options = list(), policies = list(error_is_error = function (response) FALSE), state = <environment>), class = "httr2_request")), class = c("httr2_failure", "httr2_error", "rlang_error", "error", "condition")))`: error in evaluating the argument 'x' in selecting a method for function 'rast': Failed to perform HTTP request. Caused by error in `curl::curl_fetch_memory()`: ! Timeout was reached [github.com]: Resolving timed out after 10000 milliseconds Backtrace: ▆ 1. ├─BIOMASS::getBioclimParam(coord) at test-small_function.R:42:3 2. │ ├─terra::rast(cacheManager("bio4.bil")) 3. │ └─BIOMASS::cacheManager("bio4.bil") 4. │ └─httr2::req_perform(req) 5. │ └─httr2:::handle_resp(req, resp, error_call = error_call) 6. │ └─rlang::cnd_signal(resp) 7. │ └─rlang:::signal_abort(cnd) 8. │ └─base::signalCondition(cnd) 9. └─base (local) `<fn>`(`<httr2_fl>`) ── Error ('test-small_function.R:112:3'): Michaelis function ─────────────────── Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "Failed to perform HTTP request.", trace = structure(list(call = list(data.frame(H = retrieveH(D, coord = coord)$H, D = D), retrieveH(D, coord = coord), computeE(coord), rast(cacheManager("E.bil")), cacheManager("E.bil"), httr2::req_perform(req), handle_resp(req, resp, error_call = error_call), cnd_signal(resp)), parent = c(0L, 0L, 2L, 3L, 3L, 5L, 6L, 7L), visible = c(TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, FALSE), namespace = c("base", "BIOMASS", "BIOMASS", "terra", "BIOMASS", "httr2", "httr2", "rlang"), scope = c("::", "::", "::", "::", "::", "::", ":::", "::")), row.names = c(NA, -8L), version = 2L, class = c("rlang_trace", "rlib_trace", "tbl", "data.frame")), parent = structure(list(message = "Timeout was reached [github.com]:\nResolving timed out after 10001 milliseconds", call = curl::curl_fetch_memory(url, handle)), class = c("curl_error_operation_timedout", "curl_error", "error", "condition")), call = httr2::req_perform(req), request = structure(list(url = "https://github.com/umr-amap/BIOMASS/raw/master/data-raw/climate_variable/E.zip", method = NULL, headers = list(), body = NULL, fields = list(), options = list(), policies = list(error_is_error = function (response) FALSE), state = <environment>), class = "httr2_request")), class = c("httr2_failure", "httr2_error", "rlang_error", "error", "condition")))`: error in evaluating the argument 'x' in selecting a method for function 'rast': Failed to perform HTTP request. Caused by error in `curl::curl_fetch_memory()`: ! Timeout was reached [github.com]: Resolving timed out after 10001 milliseconds Backtrace: ▆ 1. ├─base::data.frame(H = retrieveH(D, coord = coord)$H, D = D) at test-small_function.R:112:3 2. ├─BIOMASS::retrieveH(D, coord = coord) 3. │ └─BIOMASS::computeE(coord) 4. │ ├─terra::rast(cacheManager("E.bil")) 5. │ └─BIOMASS::cacheManager("E.bil") 6. │ └─httr2::req_perform(req) 7. │ └─httr2:::handle_resp(req, resp, error_call = error_call) 8. │ └─rlang::cnd_signal(resp) 9. │ └─rlang:::signal_abort(cnd) 10. │ └─base::signalCondition(cnd) 11. └─base (local) `<fn>`(`<httr2_fl>`) ── Error ('test-small_function.R:123:3'): Weibull function ───────────────────── Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "Failed to perform HTTP request.", trace = structure(list(call = list(data.frame(H = retrieveH(D, coord = coord)$H, D = D), retrieveH(D, coord = coord), computeE(coord), rast(cacheManager("E.bil")), cacheManager("E.bil"), httr2::req_perform(req), handle_resp(req, resp, error_call = error_call), cnd_signal(resp)), parent = c(0L, 0L, 2L, 3L, 3L, 5L, 6L, 7L), visible = c(TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, FALSE), namespace = c("base", "BIOMASS", "BIOMASS", "terra", "BIOMASS", "httr2", "httr2", "rlang"), scope = c("::", "::", "::", "::", "::", "::", ":::", "::")), row.names = c(NA, -8L), version = 2L, class = c("rlang_trace", "rlib_trace", "tbl", "data.frame")), parent = structure(list(message = "Timeout was reached [github.com]:\nResolving timed out after 10000 milliseconds", call = curl::curl_fetch_memory(url, handle)), class = c("curl_error_operation_timedout", "curl_error", "error", "condition")), call = httr2::req_perform(req), request = structure(list(url = "https://github.com/umr-amap/BIOMASS/raw/master/data-raw/climate_variable/E.zip", method = NULL, headers = list(), body = NULL, fields = list(), options = list(), policies = list(error_is_error = function (response) FALSE), state = <environment>), class = "httr2_request")), class = c("httr2_failure", "httr2_error", "rlang_error", "error", "condition")))`: error in evaluating the argument 'x' in selecting a method for function 'rast': Failed to perform HTTP request. Caused by error in `curl::curl_fetch_memory()`: ! Timeout was reached [github.com]: Resolving timed out after 10000 milliseconds Backtrace: ▆ 1. ├─base::data.frame(H = retrieveH(D, coord = coord)$H, D = D) at test-small_function.R:123:3 2. ├─BIOMASS::retrieveH(D, coord = coord) 3. │ └─BIOMASS::computeE(coord) 4. │ ├─terra::rast(cacheManager("E.bil")) 5. │ └─BIOMASS::cacheManager("E.bil") 6. │ └─httr2::req_perform(req) 7. │ └─httr2:::handle_resp(req, resp, error_call = error_call) 8. │ └─rlang::cnd_signal(resp) 9. │ └─rlang:::signal_abort(cnd) 10. │ └─base::signalCondition(cnd) 11. └─base (local) `<fn>`(`<httr2_fl>`) [ FAIL 3 | WARN 0 | SKIP 9 | PASS 450 ] Deleting unused snapshots: • check_coord_plot/check-plot-201-rast-prop.svg • check_coord_plot/check-plot-201-trust-f.svg • check_coord_plot/check-plot-204.svg • subplot_summary/subplot-summary-multiple-metrics-204.svg • subplot_summary/subplot-summary-multiple-plot-201.svg • subplot_summary/subplot-summary-multiple-plot-204.svg • subplot_summary/subplot-summary-proj-coords.svg • subplot_summary/subplot-summary-quantile.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc