CRAN Package Check Results for Package BioUtils

Last updated on 2026-06-25 05:50:51 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.3	2.54	123.03	125.57	OK
r-devel-linux-x86_64-debian-gcc	0.1.3	1.97	74.79	76.76	ERROR
r-devel-linux-x86_64-fedora-clang	0.1.3			197.75	OK
r-devel-linux-x86_64-fedora-gcc	0.1.3			294.91	OK
r-devel-windows-x86_64	0.1.3	6.00	209.00	215.00	OK
r-patched-linux-x86_64	0.1.3	2.21	116.24	118.45	OK
r-release-linux-x86_64	0.1.3	2.47	115.92	118.39	OK
r-release-macos-arm64	0.1.3	1.00	82.00	83.00	OK
r-release-macos-x86_64	0.1.3	2.00	223.00	225.00	OK
r-release-windows-x86_64	0.1.3	6.00	211.00	217.00	OK
r-oldrel-macos-arm64	0.1.3	1.00	84.00	85.00	OK
r-oldrel-macos-x86_64	0.1.3	2.00	157.00	159.00	OK
r-oldrel-windows-x86_64	0.1.3	8.00	257.00	265.00	OK

Check Details

Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘bioutils-case-study.Rmd’ using rmarkdown --- finished re-building ‘bioutils-case-study.Rmd’ --- re-building ‘rcc-visual-analytics.Rmd’ using rmarkdown Quitting from rcc-visual-analytics.Rmd:153-162 [load] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/httr2_failure> Error in `httr2::req_perform()`: ! Failed to perform HTTP request. Caused by error in `curl::curl_fetch_memory()`: ! Timeout was reached [ftp.ncbi.nlm.nih.gov]: Connection timed out after 120000 milliseconds --- Backtrace: ▆ 1. ├─BioUtils::extract.expression(...) 2. └─BioUtils::load.geo.soft(accession = "GDS507", log.transform = TRUE) 3. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE) 4. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL) 5. └─GEOquery:::downloadFile(myurl, destfile, mode) 6. ├─base::tryCatch(...) 7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 10. └─httr2::req_perform(req) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'rcc-visual-analytics.Rmd' failed with diagnostics: Failed to perform HTTP request. Caused by error in `curl::curl_fetch_memory()`: ! Timeout was reached [ftp.ncbi.nlm.nih.gov]: Connection timed out after 120000 milliseconds --- failed re-building ‘rcc-visual-analytics.Rmd’ SUMMARY: processing the following file failed: ‘rcc-visual-analytics.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc