CRAN Package Check Results for Package CytoProfile

Last updated on 2025-12-04 15:50:15 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.2.2	21.82	265.58	287.40	OK
r-devel-linux-x86_64-debian-gcc	0.2.2	15.43	203.28	218.71	OK
r-devel-linux-x86_64-fedora-clang	0.2.2	111.00	348.80	459.80	ERROR
r-devel-linux-x86_64-fedora-gcc	0.2.2	144.00	439.54	583.54	ERROR
r-devel-windows-x86_64	0.2.2	22.00	205.00	227.00	OK
r-patched-linux-x86_64	0.2.2	21.40	255.34	276.74	OK
r-release-linux-x86_64	0.2.2	19.32	259.10	278.42	OK
r-release-macos-arm64	0.2.2				OK
r-release-macos-x86_64	0.2.2	22.00	148.00	170.00	OK
r-release-windows-x86_64	0.2.2	20.00	213.00	233.00	OK
r-oldrel-macos-arm64	0.2.2				OK
r-oldrel-macos-x86_64	0.2.2	21.00	167.00	188.00	OK
r-oldrel-windows-x86_64	0.2.2	27.00	274.00	301.00	OK

Check Details

Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘getting_started.Rmd’ using rmarkdown Warning: ggrepel: 6 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 2 unlabeled data points (too many overlaps). Consider increasing max.overlaps Quitting from getting_started.Rmd:316-338 [ML1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `confusionMatrix.default()`: ! The data must contain some levels that overlap the reference. --- Backtrace: ▆ 1. └─CytoProfile::cyt_xgb(...) 2. ├─caret::confusionMatrix(as.factor(cv_pred_labels), as.factor(actual_labels)) 3. └─caret:::confusionMatrix.default(as.factor(cv_pred_labels), as.factor(actual_labels)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'getting_started.Rmd' failed with diagnostics: The data must contain some levels that overlap the reference. --- failed re-building ‘getting_started.Rmd’ SUMMARY: processing the following file failed: ‘getting_started.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc