CRAN Package Check Results for Maintainer ‘Adam Blake <adam at coursekata.org>’

Last updated on 2025-02-16 10:51:08 CET.

Package ERROR NOTE OK
coursekata 15
supernova 2 3 10

Package coursekata

Current CRAN status: OK: 15

Package supernova

Current CRAN status: ERROR: 2, NOTE: 3, OK: 10

Version: 3.0.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: level_pairs.Rd: tibble new_pairwise_tbl.Rd: tibble row_blank.Rd: tibble_row row_error.Rd: tibble_row row_term.Rd: tibble_row Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 3.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [65s/138s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(supernova) > > test_check("supernova") Downloading GitHub repo UCLATALL/JMRData@HEAD ── R CMD build ───────────────────────────────────────────────────────────────── * checking for file ‘/tmp/Rtmpt227eK/working_dir/RtmpAH42ll/remotes27811044d2de59/UCLATALL-JMRData-0b78ebe/DESCRIPTION’ ... OK * preparing ‘JMRData’: * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * building ‘JMRData_0.1.0.tar.gz’ Installing package into '/tmp/Rtmpt227eK/RLIBS_273fe45581abfb' (as 'lib' is unspecified) * installing *source* package ‘JMRData’ ... ** this is package ‘JMRData’ version ‘0.1.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (JMRData) [ FAIL 4 | WARN 34 | SKIP 17 | PASS 232 ] ══ Skipped tests (17) ══════════════════════════════════════════════════════════ • On CRAN (17): 'test-generate_models.R:222:3', 'test-listwise_delete.R:23:3', 'test-listwise_delete.R:29:3', 'test-listwise_delete.R:33:3', 'test-number.R:15:3', 'test-number.R:19:3', 'test-number.R:23:3', 'test-pairwise.R:18:3', 'test-pairwise.R:99:3', 'test-pairwise.R:113:3', 'test-supernova.lmerMod.R:150:3', 'test-supernova.lmerMod.R:164:3', 'test-supernova.r:321:3', 'test-supernova.r:333:3', 'test-supernova.r:338:3', 'test-supernova.r:343:3', 'test-supernova.r:348:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-supernova.lmerMod.R:95:3'): supernova can test simple nested designs ── supernova(model)$tbl (`actual`) not equal to `expected_jmr_ex11.1` (`expected`). actual vs expected SS MS F PRE p - actual[1, ] 12.500 12.5000000 2.339181 0.3690037 0.2008918 + expected[1, ] 12.500 12.5000000 4.686000 0.5400000 0.0960000 - actual[2, ] 21.375 5.3437500 NA NA NA + expected[2, ] 10.670 2.6700000 NA NA NA - actual[3, ] 33.875 6.7750000 NA NA NA + expected[3, ] 23.170 4.6300000 NA NA NA - actual[4, ] -5.375 -0.4479167 NA NA NA + expected[4, ] 5.330 0.4400000 NA NA NA - actual[5, ] 28.500 1.6764706 NA NA NA + expected[5, ] 28.500 1.6800000 NA NA NA `actual$SS`: 12.500 21.375 33.875 -5.375 28.500 `expected$SS`: 12.500 10.670 23.170 5.330 28.500 `actual$MS`: 12.500 5.344 6.775 -0.448 1.676 `expected$MS`: 12.500 2.670 4.630 0.440 1.680 `actual$F[1:4]`: 2.3 NA NA NA `expected$F[1:4]`: 4.7 NA NA NA `actual$PRE[1:4]`: 0.37 NA NA NA `expected$PRE[1:4]`: 0.54 NA NA NA `actual$p[1:4]`: 0.20 NA NA NA `expected$p[1:4]`: 0.10 NA NA NA ── Failure ('test-supernova.lmerMod.R:108:3'): supernova can test simple crossed designs ── supernova(model)$tbl (`actual`) not equal to `expected_jmr_ex11.9` (`expected`). actual vs expected SS MS F PRE p - actual[1, ] 18.277439 2.6110627 NA NA NA + expected[1, ] 18.000000 2.5714000 NA NA NA - actual[2, ] 2.250000 2.2500000 6.369914 0.4764364 0.03958605 + expected[2, ] 2.250000 2.2500000 5.727000 0.4500000 0.04794000 - actual[3, ] 2.472561 0.3532230 NA NA NA + expected[3, ] 2.750000 0.3929000 NA NA NA - actual[4, ] 4.722561 0.5903201 NA NA NA + expected[4, ] 5.000000 0.6250000 NA NA NA - actual[5, ] 23.000000 1.5333333 NA NA NA + expected[5, ] 23.000000 1.5333000 NA NA NA `actual$SS`: 18.2774 2.2500 2.4726 4.7226 23.0000 `expected$SS`: 18.0000 2.2500 2.7500 5.0000 23.0000 `actual$MS`: 2.6111 2.2500 0.3532 0.5903 1.5333 `expected$MS`: 2.5714 2.2500 0.3929 0.6250 1.5333 `actual$F`: NA 6.37 NA NA NA `expected$F`: NA 5.73 NA NA NA `actual$PRE`: NA 0.476 NA NA NA `expected$PRE`: NA 0.450 NA NA NA `actual$p`: NA 0.0396 NA NA NA `expected$p`: NA 0.0479 NA NA NA ── Failure ('test-supernova.lmerMod.R:121:3'): supernova can test multiple crossed designs ── supernova(model)$tbl (`actual`) not equal to `expected_jmr_ex11.17` (`expected`). actual vs expected SS MS F PRE p - actual[1, ] 114.400000 28.6000000 NA NA NA + expected[1, ] 131.000000 32.7500000 NA NA NA - actual[2, ] 65.866667 32.9333333 16.263374 0.8025995 0.001518423 + expected[2, ] 65.870000 32.9300000 29.940000 0.8800000 0.000000000 - actual[3, ] 16.200000 2.0250000 NA NA NA + expected[3, ] 8.800000 1.1000000 NA NA NA - actual[4, ] 17.633333 17.6333333 6.530864 0.6201641 0.062933674 + expected[4, ] 17.630000 17.6300000 11.380000 0.7400000 0.028000000 - actual[5, ] 10.800000 2.7000000 NA NA NA + expected[5, ] 6.200000 1.5500000 NA NA NA - actual[6, ] 1.866667 0.9333333 1.382716 0.2568807 0.304953824 + expected[6, ] 1.870000 0.9300000 9.330000 0.7000000 0.008000000 - actual[7, ] 5.400000 0.6750000 NA NA NA + expected[7, ] 0.800000 0.1000000 NA NA NA - actual[8, ] 117.766667 4.7106667 NA NA NA + expected[8, ] 101.170000 4.0500000 NA NA NA - actual[9, ] 232.166667 8.0057471 NA NA NA + expected[9, ] 232.170000 8.0100000 NA NA NA `actual$SS`: 114.400 65.867 16.200 17.633 10.800 1.867 5.400 117.767 232.167 `expected$SS`: 131.000 65.870 8.800 17.630 6.200 1.870 0.800 101.170 232.170 `actual$MS`: 28.600 32.933 2.025 17.633 2.700 0.933 0.675 4.711 8.006 `expected$MS`: 32.750 32.930 1.100 17.630 1.550 0.930 0.100 4.050 8.010 `actual$F`: NA 16.3 NA 6.5 NA 1.4 NA NA NA `expected$F`: NA 29.9 NA 11.4 NA 9.3 NA NA NA `actual$PRE`: NA 0.803 NA 0.620 NA 0.257 NA NA NA `expected$PRE`: NA 0.880 NA 0.740 NA 0.700 NA NA NA `actual$p`: NA 0.002 NA 0.063 NA 0.305 NA NA NA `expected$p`: NA 0.000 NA 0.028 NA 0.008 NA NA NA ── Failure ('test-supernova.lmerMod.R:134:3'): supernova can test mixed designs ── supernova(model)$tbl (`actual`) not equal to `expected_jmr_ex11.22` (`expected`). actual vs expected SS MS F PRE p - actual[1, ] 10.125000 10.1250000 5.3435954 0.30810194 0.039360377 + expected[1, ] 10.125000 10.1250000 9.5400000 0.44000000 0.009000000 - actual[2, ] 0.500000 0.5000000 0.2638813 0.02151694 0.616792935 + expected[2, ] 0.500000 0.5000000 0.4800000 0.04000000 0.506000000 - actual[3, ] 10.125000 10.1250000 5.3435954 0.30810194 0.039360377 + expected[3, ] 10.125000 10.1250000 9.5400000 0.44000000 0.009000000 - actual[4, ] 22.737500 1.8947917 NA NA NA + expected[4, ] 12.750000 1.0625000 NA NA NA - actual[5, ] 43.487500 2.8991667 NA NA NA + expected[5, ] 33.500000 2.2333000 NA NA NA - actual[6, ] 3.125000 3.1250000 12.6992853 0.51415598 0.003897925 + expected[6, ] 3.125000 3.1250000 8.8200000 0.42000000 0.012000000 - actual[7, ] 2.000000 2.0000000 8.1275426 0.40380203 0.014598786 + expected[7, ] 2.000000 2.0000000 5.6600000 0.32000000 0.035000000 - actual[8, ] 0.125000 0.1250000 0.5079714 0.04061181 0.489645842 + expected[8, ] 0.125000 0.1250000 0.3500000 0.03000000 0.565000000 - actual[9, ] 0.500000 0.5000000 2.0318857 0.14480489 0.179518795 + expected[9, ] 0.505000 0.5000000 1.4200000 0.11000000 0.256000000 - actual[10, ] 2.952922 0.2460768 NA NA NA + expected[10, ] 4.255000 0.3542000 NA NA NA and 2 more ... actual$SS | expected$SS [1] 10.125 | 10.125 [1] [2] 0.500 | 0.500 [2] [3] 10.125 | 10.125 [3] [4] 22.738 - 12.750 [4] [5] 43.488 - 33.500 [5] [6] 3.125 | 3.125 [6] [7] 2.000 | 2.000 [7] [8] 0.125 | 0.125 [8] [9] 0.500 - 0.505 [9] [10] 2.953 - 4.255 [10] ... ... ... and 2 more ... actual$MS | expected$MS [1] 10.125 | 10.125 [1] [2] 0.500 | 0.500 [2] [3] 10.125 | 10.125 [3] [4] 1.895 - 1.062 [4] [5] 2.899 - 2.233 [5] [6] 3.125 | 3.125 [6] [7] 2.000 | 2.000 [7] [8] 0.125 | 0.125 [8] [9] 0.500 | 0.500 [9] [10] 0.246 - 0.354 [10] ... ... ... and 2 more ... `actual$F`: 5.34 0.26 5.34 NA NA 12.70 8.13 0.51 2.03 NA and 2 more... `expected$F`: 9.54 0.48 9.54 NA NA 8.82 5.66 0.35 1.42 NA ... `actual$PRE`: 0.308 0.022 0.308 NA NA 0.514 0.404 0.041 0.145 NA and 2 more... `expected$PRE`: 0.440 0.040 0.440 NA NA 0.420 0.320 0.030 0.110 NA ... `actual$p`: 0.039 0.617 0.039 NA NA 0.004 0.015 0.490 0.180 NA and 2 more... `expected$p`: 0.009 0.506 0.009 NA NA 0.012 0.035 0.565 0.256 NA ... [ FAIL 4 | WARN 34 | SKIP 17 | PASS 232 ] Deleting unused snapshots: • pairwise/bonferroni-one-variable.svg • pairwise/multiple-plots-term-factor-am.svg • pairwise/multiple-plots-term-factor-cyl-factor-am.svg • pairwise/t-test-one-variable.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 3.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [82s/315s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(supernova) > > test_check("supernova") Downloading GitHub repo UCLATALL/JMRData@HEAD ── R CMD build ───────────────────────────────────────────────────────────────── * checking for file ‘/tmp/RtmpySbDYv/working_dir/RtmpMYq5ul/remotes32890f17c36948/UCLATALL-JMRData-0b78ebe/DESCRIPTION’ ... OK * preparing ‘JMRData’: * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * building ‘JMRData_0.1.0.tar.gz’ Installing package into '/data/gannet/ripley/R/packages/tests-devel/supernova.Rcheck' (as 'lib' is unspecified) * installing *source* package ‘JMRData’ ... ** this is package ‘JMRData’ version ‘0.1.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (JMRData) [ FAIL 4 | WARN 34 | SKIP 17 | PASS 232 ] ══ Skipped tests (17) ══════════════════════════════════════════════════════════ • On CRAN (17): 'test-generate_models.R:222:3', 'test-listwise_delete.R:23:3', 'test-listwise_delete.R:29:3', 'test-listwise_delete.R:33:3', 'test-number.R:15:3', 'test-number.R:19:3', 'test-number.R:23:3', 'test-pairwise.R:18:3', 'test-pairwise.R:99:3', 'test-pairwise.R:113:3', 'test-supernova.lmerMod.R:150:3', 'test-supernova.lmerMod.R:164:3', 'test-supernova.r:321:3', 'test-supernova.r:333:3', 'test-supernova.r:338:3', 'test-supernova.r:343:3', 'test-supernova.r:348:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-supernova.lmerMod.R:95:3'): supernova can test simple nested designs ── supernova(model)$tbl (`actual`) not equal to `expected_jmr_ex11.1` (`expected`). actual vs expected SS MS F PRE p - actual[1, ] 12.500 12.5000000 2.339181 0.3690037 0.2008918 + expected[1, ] 12.500 12.5000000 4.686000 0.5400000 0.0960000 - actual[2, ] 21.375 5.3437500 NA NA NA + expected[2, ] 10.670 2.6700000 NA NA NA - actual[3, ] 33.875 6.7750000 NA NA NA + expected[3, ] 23.170 4.6300000 NA NA NA - actual[4, ] -5.375 -0.4479167 NA NA NA + expected[4, ] 5.330 0.4400000 NA NA NA - actual[5, ] 28.500 1.6764706 NA NA NA + expected[5, ] 28.500 1.6800000 NA NA NA `actual$SS`: 12.500 21.375 33.875 -5.375 28.500 `expected$SS`: 12.500 10.670 23.170 5.330 28.500 `actual$MS`: 12.500 5.344 6.775 -0.448 1.676 `expected$MS`: 12.500 2.670 4.630 0.440 1.680 `actual$F[1:4]`: 2.3 NA NA NA `expected$F[1:4]`: 4.7 NA NA NA `actual$PRE[1:4]`: 0.37 NA NA NA `expected$PRE[1:4]`: 0.54 NA NA NA `actual$p[1:4]`: 0.20 NA NA NA `expected$p[1:4]`: 0.10 NA NA NA ── Failure ('test-supernova.lmerMod.R:108:3'): supernova can test simple crossed designs ── supernova(model)$tbl (`actual`) not equal to `expected_jmr_ex11.9` (`expected`). actual vs expected SS MS F PRE p - actual[1, ] 18.277439 2.6110627 NA NA NA + expected[1, ] 18.000000 2.5714000 NA NA NA - actual[2, ] 2.250000 2.2500000 6.369914 0.4764364 0.03958605 + expected[2, ] 2.250000 2.2500000 5.727000 0.4500000 0.04794000 - actual[3, ] 2.472561 0.3532230 NA NA NA + expected[3, ] 2.750000 0.3929000 NA NA NA - actual[4, ] 4.722561 0.5903201 NA NA NA + expected[4, ] 5.000000 0.6250000 NA NA NA - actual[5, ] 23.000000 1.5333333 NA NA NA + expected[5, ] 23.000000 1.5333000 NA NA NA `actual$SS`: 18.2774 2.2500 2.4726 4.7226 23.0000 `expected$SS`: 18.0000 2.2500 2.7500 5.0000 23.0000 `actual$MS`: 2.6111 2.2500 0.3532 0.5903 1.5333 `expected$MS`: 2.5714 2.2500 0.3929 0.6250 1.5333 `actual$F`: NA 6.37 NA NA NA `expected$F`: NA 5.73 NA NA NA `actual$PRE`: NA 0.476 NA NA NA `expected$PRE`: NA 0.450 NA NA NA `actual$p`: NA 0.0396 NA NA NA `expected$p`: NA 0.0479 NA NA NA ── Failure ('test-supernova.lmerMod.R:121:3'): supernova can test multiple crossed designs ── supernova(model)$tbl (`actual`) not equal to `expected_jmr_ex11.17` (`expected`). actual vs expected SS MS F PRE p - actual[1, ] 114.400000 28.6000000 NA NA NA + expected[1, ] 131.000000 32.7500000 NA NA NA - actual[2, ] 65.866667 32.9333333 16.263374 0.8025995 0.001518423 + expected[2, ] 65.870000 32.9300000 29.940000 0.8800000 0.000000000 - actual[3, ] 16.200000 2.0250000 NA NA NA + expected[3, ] 8.800000 1.1000000 NA NA NA - actual[4, ] 17.633333 17.6333333 6.530864 0.6201641 0.062933674 + expected[4, ] 17.630000 17.6300000 11.380000 0.7400000 0.028000000 - actual[5, ] 10.800000 2.7000000 NA NA NA + expected[5, ] 6.200000 1.5500000 NA NA NA - actual[6, ] 1.866667 0.9333333 1.382716 0.2568807 0.304953824 + expected[6, ] 1.870000 0.9300000 9.330000 0.7000000 0.008000000 - actual[7, ] 5.400000 0.6750000 NA NA NA + expected[7, ] 0.800000 0.1000000 NA NA NA - actual[8, ] 117.766667 4.7106667 NA NA NA + expected[8, ] 101.170000 4.0500000 NA NA NA - actual[9, ] 232.166667 8.0057471 NA NA NA + expected[9, ] 232.170000 8.0100000 NA NA NA `actual$SS`: 114.400 65.867 16.200 17.633 10.800 1.867 5.400 117.767 232.167 `expected$SS`: 131.000 65.870 8.800 17.630 6.200 1.870 0.800 101.170 232.170 `actual$MS`: 28.600 32.933 2.025 17.633 2.700 0.933 0.675 4.711 8.006 `expected$MS`: 32.750 32.930 1.100 17.630 1.550 0.930 0.100 4.050 8.010 `actual$F`: NA 16.3 NA 6.5 NA 1.4 NA NA NA `expected$F`: NA 29.9 NA 11.4 NA 9.3 NA NA NA `actual$PRE`: NA 0.803 NA 0.620 NA 0.257 NA NA NA `expected$PRE`: NA 0.880 NA 0.740 NA 0.700 NA NA NA `actual$p`: NA 0.002 NA 0.063 NA 0.305 NA NA NA `expected$p`: NA 0.000 NA 0.028 NA 0.008 NA NA NA ── Failure ('test-supernova.lmerMod.R:134:3'): supernova can test mixed designs ── supernova(model)$tbl (`actual`) not equal to `expected_jmr_ex11.22` (`expected`). actual vs expected SS MS F PRE p - actual[1, ] 10.125000 10.1250000 5.3435954 0.30810194 0.039360377 + expected[1, ] 10.125000 10.1250000 9.5400000 0.44000000 0.009000000 - actual[2, ] 0.500000 0.5000000 0.2638813 0.02151694 0.616792935 + expected[2, ] 0.500000 0.5000000 0.4800000 0.04000000 0.506000000 - actual[3, ] 10.125000 10.1250000 5.3435954 0.30810194 0.039360377 + expected[3, ] 10.125000 10.1250000 9.5400000 0.44000000 0.009000000 - actual[4, ] 22.737500 1.8947917 NA NA NA + expected[4, ] 12.750000 1.0625000 NA NA NA - actual[5, ] 43.487500 2.8991667 NA NA NA + expected[5, ] 33.500000 2.2333000 NA NA NA - actual[6, ] 3.125000 3.1250000 12.6992853 0.51415598 0.003897925 + expected[6, ] 3.125000 3.1250000 8.8200000 0.42000000 0.012000000 - actual[7, ] 2.000000 2.0000000 8.1275426 0.40380203 0.014598786 + expected[7, ] 2.000000 2.0000000 5.6600000 0.32000000 0.035000000 - actual[8, ] 0.125000 0.1250000 0.5079714 0.04061181 0.489645842 + expected[8, ] 0.125000 0.1250000 0.3500000 0.03000000 0.565000000 - actual[9, ] 0.500000 0.5000000 2.0318857 0.14480489 0.179518795 + expected[9, ] 0.505000 0.5000000 1.4200000 0.11000000 0.256000000 - actual[10, ] 2.952922 0.2460768 NA NA NA + expected[10, ] 4.255000 0.3542000 NA NA NA and 2 more ... actual$SS | expected$SS [1] 10.125 | 10.125 [1] [2] 0.500 | 0.500 [2] [3] 10.125 | 10.125 [3] [4] 22.738 - 12.750 [4] [5] 43.488 - 33.500 [5] [6] 3.125 | 3.125 [6] [7] 2.000 | 2.000 [7] [8] 0.125 | 0.125 [8] [9] 0.500 - 0.505 [9] [10] 2.953 - 4.255 [10] ... ... ... and 2 more ... actual$MS | expected$MS [1] 10.125 | 10.125 [1] [2] 0.500 | 0.500 [2] [3] 10.125 | 10.125 [3] [4] 1.895 - 1.062 [4] [5] 2.899 - 2.233 [5] [6] 3.125 | 3.125 [6] [7] 2.000 | 2.000 [7] [8] 0.125 | 0.125 [8] [9] 0.500 | 0.500 [9] [10] 0.246 - 0.354 [10] ... ... ... and 2 more ... `actual$F`: 5.34 0.26 5.34 NA NA 12.70 8.13 0.51 2.03 NA and 2 more... `expected$F`: 9.54 0.48 9.54 NA NA 8.82 5.66 0.35 1.42 NA ... `actual$PRE`: 0.308 0.022 0.308 NA NA 0.514 0.404 0.041 0.145 NA and 2 more... `expected$PRE`: 0.440 0.040 0.440 NA NA 0.420 0.320 0.030 0.110 NA ... `actual$p`: 0.039 0.617 0.039 NA NA 0.004 0.015 0.490 0.180 NA and 2 more... `expected$p`: 0.009 0.506 0.009 NA NA 0.012 0.035 0.565 0.256 NA ... [ FAIL 4 | WARN 34 | SKIP 17 | PASS 232 ] Deleting unused snapshots: • pairwise/bonferroni-one-variable.svg • pairwise/multiple-plots-term-factor-am.svg • pairwise/multiple-plots-term-factor-cyl-factor-am.svg • pairwise/t-test-one-variable.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 3.0.0
Check: for non-standard things in the check directory
Result: NOTE Found the following files/directories: ‘JMRData’ Flavor: r-devel-linux-x86_64-fedora-gcc

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.