Last updated on 2025-01-23 03:50:28 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.6.3 | 12.08 | 103.50 | 115.58 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.9.4 | 11.24 | 133.20 | 144.44 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.9.4 | 320.88 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.9.4 | 324.49 | OK | |||
| r-devel-windows-x86_64 | 0.9.4 | 21.00 | 188.00 | 209.00 | OK | |
| r-patched-linux-x86_64 | 0.9.4 | 13.76 | 169.86 | 183.62 | OK | |
| r-release-linux-x86_64 | 0.6.3 | 11.22 | 96.48 | 107.70 | ERROR | |
| r-release-macos-arm64 | 0.6.3 | 67.00 | OK | |||
| r-release-macos-x86_64 | 0.9.4 | 187.00 | OK | |||
| r-release-windows-x86_64 | 0.9.4 | 14.00 | 261.00 | 275.00 | OK | |
| r-oldrel-macos-arm64 | 0.6.3 | 60.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.6.3 | 168.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.9.4 | 21.00 | 219.00 | 240.00 | OK |
Version: 0.6.3
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Note: possible error in 'edit_matches(new = externalConcepts$label, ': unused argument (target = externalConcepts %>% select(has_broader, class))
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/arealDB.Rcheck/00install.out’ for details.
Information on the location(s) of code generating the ‘Note’s can be
obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
to ‘yes’.
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.6.3
Check: R code for possible problems
Result: NOTE
matchOntology: possible error in edit_matches(new =
externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep): unused argument (target = externalConcepts %>%
select(has_broader, class))
Flavors: r-devel-linux-x86_64-debian-clang, r-release-linux-x86_64
Version: 0.6.3
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
normGeometry.Rd: st_drivers
normTable.Rd: reorganise
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.6.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [15s/29s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> test_check("arealDB")
Loading required package: arealDB
[ FAIL 5 | WARN 1 | SKIP 4 | PASS 62 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• empty test (4): 'test_matchOntology.R:7:1', 'test_matchOntology.R:12:1',
'test_matchOntology.R:17:1', 'test_matchOntology.R:22:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_01_makeExampleDB.R:89:3'): make example DB until normGeometry ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_01_makeExampleDB.R:89:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_01_makeExampleDB.R:99:3'): make example DB until normTable ─────
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normTable", path = dbpath) at test_01_makeExampleDB.R:99:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_06_normGeometry.R:16:3'): geometries can be normalised ─────────
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::normGeometry(...) at test_06_normGeometry.R:16:3
2. └─arealDB::matchOntology(...)
── Error ('test_07_normTable.R:13:3'): tables can be normalised (without matched variables) ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_07_normTable.R:13:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_07_normTable.R:42:3'): tables can be normalised (with matched variables) ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_07_normTable.R:42:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
[ FAIL 5 | WARN 1 | SKIP 4 | PASS 62 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.6.3
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Note: possible error in 'edit_matches(new = externalConcepts$label, ': unused argument (target = externalConcepts %>% select(has_broader, class))
See ‘/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/arealDB.Rcheck/00install.out’ for details.
Information on the location(s) of code generating the ‘Note’s can be
obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
to ‘yes’.
Flavor: r-release-linux-x86_64
Version: 0.6.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> test_check("arealDB")
Loading required package: arealDB
[ FAIL 5 | WARN 1 | SKIP 4 | PASS 62 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• empty test (4): 'test_matchOntology.R:7:1', 'test_matchOntology.R:12:1',
'test_matchOntology.R:17:1', 'test_matchOntology.R:22:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_01_makeExampleDB.R:89:3'): make example DB until normGeometry ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_01_makeExampleDB.R:89:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_01_makeExampleDB.R:99:3'): make example DB until normTable ─────
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normTable", path = dbpath) at test_01_makeExampleDB.R:99:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_06_normGeometry.R:16:3'): geometries can be normalised ─────────
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::normGeometry(...) at test_06_normGeometry.R:16:3
2. └─arealDB::matchOntology(...)
── Error ('test_07_normTable.R:13:3'): tables can be normalised (without matched variables) ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_07_normTable.R:13:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_07_normTable.R:42:3'): tables can be normalised (with matched variables) ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_07_normTable.R:42:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
[ FAIL 5 | WARN 1 | SKIP 4 | PASS 62 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
These binaries (installable software) and packages are in development.
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