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Last updated on 2026-10-24 05:51:11 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.7.4 | 8.49 | 147.58 | 156.07 | OK | |
| r-devel-linux-x86_64-debian-gcc | 3.7.4 | 5.31 | 94.75 | 100.06 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 3.7.4 | 6.00 | 100.41 | 106.41 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 3.7.4 | 111.94 | OK | |||
| r-devel-windows-x86_64 | 3.7.4 | 10.00 | 167.00 | 177.00 | OK | |
| r-patched-linux-x86_64 | 3.7.4 | 8.66 | 141.66 | 150.32 | OK | |
| r-release-linux-x86_64 | 3.7.1 | 7.38 | 142.27 | 149.65 | OK | |
| r-release-macos-arm64 | 3.7.4 | 2.00 | 43.00 | 45.00 | OK | |
| r-release-macos-x86_64 | 3.7.4 | 6.00 | 147.00 | 153.00 | OK | |
| r-release-windows-x86_64 | 3.7.4 | 9.00 | 162.00 | 171.00 | OK | |
| r-oldrel-macos-arm64 | 3.7.4 | 3.00 | 57.00 | 60.00 | ERROR | |
| r-oldrel-macos-x86_64 | 3.7.4 | 5.00 | 150.00 | 155.00 | OK | |
| r-oldrel-windows-x86_64 | 3.7.4 | 15.00 | 205.00 | 220.00 | OK |
Version: 3.7.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘comparedf.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘comparedf.Rmd’
--- re-building ‘freqlist.Rmd’ using rmarkdown
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-1'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'loading.data'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'console.output'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-6'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-7'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-8'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'labelTranslations'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'sparse'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'na.options'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'freq.counts'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-9'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'changelabs'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-10'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-11'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-12'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-13'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-14'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-15'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-16'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-17'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘freqlist.Rmd’
--- re-building ‘labels.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘labels.Rmd’
--- re-building ‘modelsum.Rmd’ using rmarkdown
Quitting from modelsum.Rmd:229-256 [survival]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
▆
1. └─survival::cox.zph(fit)
2. └─survival:::coxph.getdata(...)
3. ├─stats::model.matrix(fit, data = mf)
4. └─survival:::model.matrix.coxph(fit, data = mf)
5. └─stats::delete.response(object$terms)
6. └─stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'modelsum.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘modelsum.Rmd’
--- re-building ‘paired.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘paired.Rmd’
--- re-building ‘tableby.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘tableby.Rmd’
--- re-building ‘write2.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘write2.Rmd’
SUMMARY: processing the following file failed:
‘modelsum.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.7.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(arsenal)
>
> test_check("arsenal")
Saving _problems/test_lhs_modelsum-338.R
[ FAIL 1 | WARN 0 | SKIP 12 | PASS 499 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (12): 'test_write2.R:34:3', 'test_write2.R:40:3',
'test_write2.R:48:3', 'test_write2.R:53:3', 'test_write2.R:65:3',
'test_write2.R:107:3', 'test_write2.R:111:3', 'test_write2.R:115:3',
'test_write2.R:126:3', 'test_write2.R:131:3', 'test_write2.R:137:3',
'test_write2.R:192:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_lhs_modelsum.R:281:3'): Changing labels ──────────────────────
Expected `tmp` to be identical to `c(...)`.
Differences:
1/54 mismatches
x[23]: "| |(Intercept) |39.188 |1.296 |< 0.001 |-0.058 |"
y[23]: "| |(Intercept) |39.187 |1.296 |< 0.001 |-0.058 |"
[ FAIL 1 | WARN 0 | SKIP 12 | PASS 499 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
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They may not be fully stable and should be used with caution. We make no claims about them.