CRAN Package Check Results for Package atime

Last updated on 2024-11-21 19:52:31 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2024.10.5 3.49 135.13 138.62 OK
r-devel-linux-x86_64-debian-gcc 2024.11.15 2.42 113.94 116.36 ERROR
r-devel-linux-x86_64-fedora-clang 2024.11.15 226.59 ERROR
r-devel-linux-x86_64-fedora-gcc 2024.11.15 237.02 ERROR
r-devel-windows-x86_64 2024.11.15 5.00 207.00 212.00 OK
r-patched-linux-x86_64 2024.11.15 2.20 147.06 149.26 ERROR
r-release-linux-x86_64 2024.10.5 3.05 132.60 135.65 OK
r-release-macos-arm64 2024.11.15 115.00 OK
r-release-macos-x86_64 2024.11.15 212.00 OK
r-release-windows-x86_64 2024.11.15 5.00 209.00 214.00 OK
r-oldrel-macos-arm64 2024.11.15 109.00 OK
r-oldrel-macos-x86_64 2024.11.15 188.00 OK
r-oldrel-windows-x86_64 2024.11.15 8.00 246.00 254.00 OK

Check Details

Version: 2024.11.15
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Custom_Plots.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 40289 bytes Input file size = 40415 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34103 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34103 Output IDAT size = 34103 bytes (6186 bytes decrease) Output file size = 34181 bytes (6234 bytes = 15.42% decrease) ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 39379 bytes Input file size = 39505 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33669 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33669 Output IDAT size = 33669 bytes (5710 bytes decrease) Output file size = 33747 bytes (5758 bytes = 14.58% decrease) ** Processing: figure/unnamed-chunk-3-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36690 bytes Input file size = 36816 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32403 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32403 Output IDAT size = 32403 bytes (4287 bytes decrease) Output file size = 32481 bytes (4335 bytes = 11.77% decrease) --- finished re-building ‘Custom_Plots.Rmd’ --- re-building ‘Custom_References.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37153 bytes Input file size = 37279 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31555 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31555 Output IDAT size = 31555 bytes (5598 bytes decrease) Output file size = 31633 bytes (5646 bytes = 15.15% decrease) ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 52770 bytes Input file size = 52920 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50508 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 49314 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 49314 Output IDAT size = 49314 bytes (3456 bytes decrease) Output file size = 49392 bytes (3528 bytes = 6.67% decrease) ** Processing: figure/unnamed-chunk-3-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46772 bytes Input file size = 46910 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41185 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41185 Output IDAT size = 41185 bytes (5587 bytes decrease) Output file size = 41263 bytes (5647 bytes = 12.04% decrease) ** Processing: figure/unnamed-chunk-5-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49565 bytes Input file size = 49715 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47213 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 46156 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 46156 Output IDAT size = 46156 bytes (3409 bytes decrease) Output file size = 46234 bytes (3481 bytes = 7.00% decrease) ** Processing: figure/unnamed-chunk-6-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 56340 bytes Input file size = 56490 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 56051 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 52831 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 52831 Output IDAT size = 52831 bytes (3509 bytes decrease) Output file size = 52909 bytes (3581 bytes = 6.34% decrease) --- finished re-building ‘Custom_References.Rmd’ --- re-building ‘Custom_Units.Rmd’ using knitr ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31607 bytes Input file size = 31721 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26741 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26741 Output IDAT size = 26741 bytes (4866 bytes decrease) Output file size = 26819 bytes (4902 bytes = 15.45% decrease) ** Processing: figure/unnamed-chunk-3-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 48630 bytes Input file size = 48768 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40778 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40778 Output IDAT size = 40778 bytes (7852 bytes decrease) Output file size = 40856 bytes (7912 bytes = 16.22% decrease) ** Processing: figure/unnamed-chunk-7-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33101 bytes Input file size = 33227 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27542 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27542 Output IDAT size = 27542 bytes (5559 bytes decrease) Output file size = 27620 bytes (5607 bytes = 16.87% decrease) Warning in (function (..., deparse.level = 1) : number of rows of result is not a multiple of vector length (arg 2) ** Processing: figure/unnamed-chunk-8-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 40398 bytes Input file size = 40524 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34185 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34185 Output IDAT size = 34185 bytes (6213 bytes decrease) Output file size = 34263 bytes (6261 bytes = 15.45% decrease) --- finished re-building ‘Custom_Units.Rmd’ --- re-building ‘cum_median.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27710 bytes Input file size = 27824 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23516 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23516 Output IDAT size = 23516 bytes (4194 bytes decrease) Output file size = 23594 bytes (4230 bytes = 15.20% decrease) ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 43258 bytes Input file size = 43396 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40083 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40083 Output IDAT size = 40083 bytes (3175 bytes decrease) Output file size = 40161 bytes (3235 bytes = 7.45% decrease) --- finished re-building ‘cum_median.Rmd’ --- re-building ‘regex.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27556 bytes Input file size = 27670 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 25861 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 25861 Output IDAT size = 25861 bytes (1695 bytes decrease) Output file size = 25939 bytes (1731 bytes = 6.26% decrease) ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36893 bytes Input file size = 37019 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 34701 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 34701 Output IDAT size = 34701 bytes (2192 bytes decrease) Output file size = 34779 bytes (2240 bytes = 6.05% decrease) ** Processing: figure/unnamed-chunk-4-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32255 bytes Input file size = 32369 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29799 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29799 Output IDAT size = 29799 bytes (2456 bytes decrease) Output file size = 29877 bytes (2492 bytes = 7.70% decrease) ** Processing: figure/unnamed-chunk-5-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32902 bytes Input file size = 33028 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 30324 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 30324 Output IDAT size = 30324 bytes (2578 bytes decrease) Output file size = 30402 bytes (2626 bytes = 7.95% decrease) --- finished re-building ‘regex.Rmd’ --- re-building ‘sparse.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32728 bytes Input file size = 32842 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28028 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28028 Output IDAT size = 28028 bytes (4700 bytes decrease) Output file size = 28106 bytes (4736 bytes = 14.42% decrease) ** Processing: figure/unnamed-chunk-3-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36074 bytes Input file size = 36200 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30907 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30907 Output IDAT size = 30907 bytes (5167 bytes decrease) Output file size = 30985 bytes (5215 bytes = 14.41% decrease) ** Processing: figure/unnamed-chunk-4-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51973 bytes Input file size = 52123 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 42902 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 42902 Output IDAT size = 42902 bytes (9071 bytes decrease) Output file size = 42980 bytes (9143 bytes = 17.54% decrease) Quitting from lines 155-161 [unnamed-chunk-5] (sparse.Rmd) Error: processing vignette 'sparse.Rmd' failed with diagnostics: kilobytes is not a valid unit; argument names of predict must be one of these valid units: length, seconds --- failed re-building ‘sparse.Rmd’ SUMMARY: processing the following file failed: ‘sparse.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2024.11.15
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Custom_Plots.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32652 bytes Input file size = 32766 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28658 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28658 Output IDAT size = 28658 bytes (3994 bytes decrease) Output file size = 28736 bytes (4030 bytes = 12.30% decrease) ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35439 bytes Input file size = 35565 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30233 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30233 Output IDAT size = 30233 bytes (5206 bytes decrease) Output file size = 30311 bytes (5254 bytes = 14.77% decrease) ** Processing: figure/unnamed-chunk-3-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31122 bytes Input file size = 31236 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27469 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27469 Output IDAT size = 27469 bytes (3653 bytes decrease) Output file size = 27547 bytes (3689 bytes = 11.81% decrease) --- finished re-building ‘Custom_Plots.Rmd’ --- re-building ‘Custom_References.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27887 bytes Input file size = 28001 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23889 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23889 Output IDAT size = 23889 bytes (3998 bytes decrease) Output file size = 23967 bytes (4034 bytes = 14.41% decrease) ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26776 bytes Input file size = 26890 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23677 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23677 Output IDAT size = 23677 bytes (3099 bytes decrease) Output file size = 23755 bytes (3135 bytes = 11.66% decrease) ** Processing: figure/unnamed-chunk-3-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23597 bytes Input file size = 23699 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21196 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21196 Output IDAT size = 21196 bytes (2401 bytes decrease) Output file size = 21274 bytes (2425 bytes = 10.23% decrease) ** Processing: figure/unnamed-chunk-5-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26776 bytes Input file size = 26890 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23677 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23677 Output IDAT size = 23677 bytes (3099 bytes decrease) Output file size = 23755 bytes (3135 bytes = 11.66% decrease) ** Processing: figure/unnamed-chunk-6-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29179 bytes Input file size = 29293 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26311 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26311 Output IDAT size = 26311 bytes (2868 bytes decrease) Output file size = 26389 bytes (2904 bytes = 9.91% decrease) --- finished re-building ‘Custom_References.Rmd’ --- re-building ‘Custom_Units.Rmd’ using knitr ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29668 bytes Input file size = 29782 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25324 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25324 Output IDAT size = 25324 bytes (4344 bytes decrease) Output file size = 25402 bytes (4380 bytes = 14.71% decrease) ** Processing: figure/unnamed-chunk-3-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 47557 bytes Input file size = 47695 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39493 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39493 Output IDAT size = 39493 bytes (8064 bytes decrease) Output file size = 39571 bytes (8124 bytes = 17.03% decrease) ** Processing: figure/unnamed-chunk-7-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 34300 bytes Input file size = 34426 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28722 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28722 Output IDAT size = 28722 bytes (5578 bytes decrease) Output file size = 28800 bytes (5626 bytes = 16.34% decrease) Warning in (function (..., deparse.level = 1) : number of rows of result is not a multiple of vector length (arg 2) ** Processing: figure/unnamed-chunk-8-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 43946 bytes Input file size = 44084 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36460 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36460 Output IDAT size = 36460 bytes (7486 bytes decrease) Output file size = 36538 bytes (7546 bytes = 17.12% decrease) --- finished re-building ‘Custom_Units.Rmd’ --- re-building ‘cum_median.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25490 bytes Input file size = 25604 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22276 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22276 Output IDAT size = 22276 bytes (3214 bytes decrease) Output file size = 22354 bytes (3250 bytes = 12.69% decrease) ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 40983 bytes Input file size = 41121 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38438 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 38157 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 38157 Output IDAT size = 38157 bytes (2826 bytes decrease) Output file size = 38235 bytes (2886 bytes = 7.02% decrease) --- finished re-building ‘cum_median.Rmd’ --- re-building ‘regex.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28563 bytes Input file size = 28677 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26540 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26540 Output IDAT size = 26540 bytes (2023 bytes decrease) Output file size = 26618 bytes (2059 bytes = 7.18% decrease) ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36376 bytes Input file size = 36502 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 34322 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 34322 Output IDAT size = 34322 bytes (2054 bytes decrease) Output file size = 34400 bytes (2102 bytes = 5.76% decrease) ** Processing: figure/unnamed-chunk-4-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 34272 bytes Input file size = 34398 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32049 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32049 Output IDAT size = 32049 bytes (2223 bytes decrease) Output file size = 32127 bytes (2271 bytes = 6.60% decrease) ** Processing: figure/unnamed-chunk-5-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30371 bytes Input file size = 30485 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 27772 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 27772 Output IDAT size = 27772 bytes (2599 bytes decrease) Output file size = 27850 bytes (2635 bytes = 8.64% decrease) --- finished re-building ‘regex.Rmd’ --- re-building ‘sparse.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31306 bytes Input file size = 31420 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26732 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26732 Output IDAT size = 26732 bytes (4574 bytes decrease) Output file size = 26810 bytes (4610 bytes = 14.67% decrease) ** Processing: figure/unnamed-chunk-3-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36229 bytes Input file size = 36355 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30490 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30490 Output IDAT size = 30490 bytes (5739 bytes decrease) Output file size = 30568 bytes (5787 bytes = 15.92% decrease) ** Processing: figure/unnamed-chunk-4-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46672 bytes Input file size = 46810 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39675 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39675 Output IDAT size = 39675 bytes (6997 bytes decrease) Output file size = 39753 bytes (7057 bytes = 15.08% decrease) Quitting from lines 155-161 [unnamed-chunk-5] (sparse.Rmd) Error: processing vignette 'sparse.Rmd' failed with diagnostics: kilobytes is not a valid unit; argument names of predict must be one of these valid units: length, seconds --- failed re-building ‘sparse.Rmd’ SUMMARY: processing the following file failed: ‘sparse.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 2024.11.15
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Custom_Plots.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 34998 bytes Input file size = 35124 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30072 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30072 Output IDAT size = 30072 bytes (4926 bytes decrease) Output file size = 30150 bytes (4974 bytes = 14.16% decrease) ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35716 bytes Input file size = 35842 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30411 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30411 Output IDAT size = 30411 bytes (5305 bytes decrease) Output file size = 30489 bytes (5353 bytes = 14.93% decrease) ** Processing: figure/unnamed-chunk-3-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32523 bytes Input file size = 32637 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29417 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29417 Output IDAT size = 29417 bytes (3106 bytes decrease) Output file size = 29495 bytes (3142 bytes = 9.63% decrease) --- finished re-building ‘Custom_Plots.Rmd’ --- re-building ‘Custom_References.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32029 bytes Input file size = 32143 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26684 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26684 Output IDAT size = 26684 bytes (5345 bytes decrease) Output file size = 26762 bytes (5381 bytes = 16.74% decrease) ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 45764 bytes Input file size = 45902 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39731 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39731 Output IDAT size = 39731 bytes (6033 bytes decrease) Output file size = 39809 bytes (6093 bytes = 13.27% decrease) ** Processing: figure/unnamed-chunk-3-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32830 bytes Input file size = 32956 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29415 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29415 Output IDAT size = 29415 bytes (3415 bytes decrease) Output file size = 29493 bytes (3463 bytes = 10.51% decrease) ** Processing: figure/unnamed-chunk-5-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 41672 bytes Input file size = 41810 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36582 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36582 Output IDAT size = 36582 bytes (5090 bytes decrease) Output file size = 36660 bytes (5150 bytes = 12.32% decrease) ** Processing: figure/unnamed-chunk-6-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 52180 bytes Input file size = 52330 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46873 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46873 Output IDAT size = 46873 bytes (5307 bytes decrease) Output file size = 46951 bytes (5379 bytes = 10.28% decrease) --- finished re-building ‘Custom_References.Rmd’ --- re-building ‘Custom_Units.Rmd’ using knitr ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30652 bytes Input file size = 30766 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26628 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26628 Output IDAT size = 26628 bytes (4024 bytes decrease) Output file size = 26706 bytes (4060 bytes = 13.20% decrease) ** Processing: figure/unnamed-chunk-3-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 42261 bytes Input file size = 42399 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36891 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36891 Output IDAT size = 36891 bytes (5370 bytes decrease) Output file size = 36969 bytes (5430 bytes = 12.81% decrease) ** Processing: figure/unnamed-chunk-7-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33703 bytes Input file size = 33829 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28133 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28133 Output IDAT size = 28133 bytes (5570 bytes decrease) Output file size = 28211 bytes (5618 bytes = 16.61% decrease) Warning in (function (..., deparse.level = 1) : number of rows of result is not a multiple of vector length (arg 2) ** Processing: figure/unnamed-chunk-8-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 43455 bytes Input file size = 43593 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36145 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36145 Output IDAT size = 36145 bytes (7310 bytes decrease) Output file size = 36223 bytes (7370 bytes = 16.91% decrease) --- finished re-building ‘Custom_Units.Rmd’ --- re-building ‘cum_median.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25889 bytes Input file size = 26003 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22739 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22739 Output IDAT size = 22739 bytes (3150 bytes decrease) Output file size = 22817 bytes (3186 bytes = 12.25% decrease) ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 42457 bytes Input file size = 42595 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41039 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 39814 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 39814 Output IDAT size = 39814 bytes (2643 bytes decrease) Output file size = 39892 bytes (2703 bytes = 6.35% decrease) --- finished re-building ‘cum_median.Rmd’ --- re-building ‘regex.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28253 bytes Input file size = 28367 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26279 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26279 Output IDAT size = 26279 bytes (1974 bytes decrease) Output file size = 26357 bytes (2010 bytes = 7.09% decrease) ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35392 bytes Input file size = 35518 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 33404 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 33404 Output IDAT size = 33404 bytes (1988 bytes decrease) Output file size = 33482 bytes (2036 bytes = 5.73% decrease) ** Processing: figure/unnamed-chunk-4-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33584 bytes Input file size = 33710 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31053 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31053 Output IDAT size = 31053 bytes (2531 bytes decrease) Output file size = 31131 bytes (2579 bytes = 7.65% decrease) ** Processing: figure/unnamed-chunk-5-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26615 bytes Input file size = 26729 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 23910 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 23910 Output IDAT size = 23910 bytes (2705 bytes decrease) Output file size = 23988 bytes (2741 bytes = 10.25% decrease) --- finished re-building ‘regex.Rmd’ --- re-building ‘sparse.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 34624 bytes Input file size = 34750 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29498 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29498 Output IDAT size = 29498 bytes (5126 bytes decrease) Output file size = 29576 bytes (5174 bytes = 14.89% decrease) ** Processing: figure/unnamed-chunk-3-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 34669 bytes Input file size = 34795 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29299 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29299 Output IDAT size = 29299 bytes (5370 bytes decrease) Output file size = 29377 bytes (5418 bytes = 15.57% decrease) ** Processing: figure/unnamed-chunk-4-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 55851 bytes Input file size = 56001 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46320 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46320 Output IDAT size = 46320 bytes (9531 bytes decrease) Output file size = 46398 bytes (9603 bytes = 17.15% decrease) Quitting from lines 155-161 [unnamed-chunk-5] (sparse.Rmd) Error: processing vignette 'sparse.Rmd' failed with diagnostics: kilobytes is not a valid unit; argument names of predict must be one of these valid units: length, seconds --- failed re-building ‘sparse.Rmd’ SUMMARY: processing the following file failed: ‘sparse.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 2024.11.15
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Custom_Plots.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38446 bytes Input file size = 38572 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34139 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34139 Output IDAT size = 34139 bytes (4307 bytes decrease) Output file size = 34217 bytes (4355 bytes = 11.29% decrease) ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37446 bytes Input file size = 37572 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32758 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32758 Output IDAT size = 32758 bytes (4688 bytes decrease) Output file size = 32836 bytes (4736 bytes = 12.61% decrease) ** Processing: figure/unnamed-chunk-3-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37486 bytes Input file size = 37612 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33728 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33728 Output IDAT size = 33728 bytes (3758 bytes decrease) Output file size = 33806 bytes (3806 bytes = 10.12% decrease) --- finished re-building ‘Custom_Plots.Rmd’ --- re-building ‘Custom_References.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35823 bytes Input file size = 35949 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31197 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31197 Output IDAT size = 31197 bytes (4626 bytes decrease) Output file size = 31275 bytes (4674 bytes = 13.00% decrease) ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49355 bytes Input file size = 49505 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48397 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 45918 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 45918 Output IDAT size = 45918 bytes (3437 bytes decrease) Output file size = 45996 bytes (3509 bytes = 7.09% decrease) ** Processing: figure/unnamed-chunk-3-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46359 bytes Input file size = 46497 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41243 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41243 Output IDAT size = 41243 bytes (5116 bytes decrease) Output file size = 41321 bytes (5176 bytes = 11.13% decrease) ** Processing: figure/unnamed-chunk-5-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46634 bytes Input file size = 46772 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45480 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 43297 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 43297 Output IDAT size = 43297 bytes (3337 bytes decrease) Output file size = 43375 bytes (3397 bytes = 7.26% decrease) ** Processing: figure/unnamed-chunk-6-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 55635 bytes Input file size = 55785 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 52060 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 52060 Output IDAT size = 52060 bytes (3575 bytes decrease) Output file size = 52138 bytes (3647 bytes = 6.54% decrease) --- finished re-building ‘Custom_References.Rmd’ --- re-building ‘Custom_Units.Rmd’ using knitr ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31247 bytes Input file size = 31361 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26711 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26711 Output IDAT size = 26711 bytes (4536 bytes decrease) Output file size = 26789 bytes (4572 bytes = 14.58% decrease) ** Processing: figure/unnamed-chunk-3-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 45379 bytes Input file size = 45517 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39175 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39175 Output IDAT size = 39175 bytes (6204 bytes decrease) Output file size = 39253 bytes (6264 bytes = 13.76% decrease) ** Processing: figure/unnamed-chunk-7-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33003 bytes Input file size = 33129 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27922 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27922 Output IDAT size = 27922 bytes (5081 bytes decrease) Output file size = 28000 bytes (5129 bytes = 15.48% decrease) Warning in (function (..., deparse.level = 1) : number of rows of result is not a multiple of vector length (arg 2) ** Processing: figure/unnamed-chunk-8-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 39114 bytes Input file size = 39240 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32908 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32908 Output IDAT size = 32908 bytes (6206 bytes decrease) Output file size = 32986 bytes (6254 bytes = 15.94% decrease) --- finished re-building ‘Custom_Units.Rmd’ --- re-building ‘cum_median.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27607 bytes Input file size = 27721 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23603 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23603 Output IDAT size = 23603 bytes (4004 bytes decrease) Output file size = 23681 bytes (4040 bytes = 14.57% decrease) ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 42464 bytes Input file size = 42602 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39688 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39688 Output IDAT size = 39688 bytes (2776 bytes decrease) Output file size = 39766 bytes (2836 bytes = 6.66% decrease) --- finished re-building ‘cum_median.Rmd’ --- re-building ‘regex.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26091 bytes Input file size = 26205 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24357 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24357 Output IDAT size = 24357 bytes (1734 bytes decrease) Output file size = 24435 bytes (1770 bytes = 6.75% decrease) ** Processing: figure/unnamed-chunk-2-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37185 bytes Input file size = 37311 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 35082 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 35082 Output IDAT size = 35082 bytes (2103 bytes decrease) Output file size = 35160 bytes (2151 bytes = 5.77% decrease) ** Processing: figure/unnamed-chunk-4-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33570 bytes Input file size = 33696 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30562 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30562 Output IDAT size = 30562 bytes (3008 bytes decrease) Output file size = 30640 bytes (3056 bytes = 9.07% decrease) ** Processing: figure/unnamed-chunk-5-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 34464 bytes Input file size = 34590 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 31922 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 31922 Output IDAT size = 31922 bytes (2542 bytes decrease) Output file size = 32000 bytes (2590 bytes = 7.49% decrease) --- finished re-building ‘regex.Rmd’ --- re-building ‘sparse.Rmd’ using knitr ** Processing: figure/unnamed-chunk-1-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32274 bytes Input file size = 32388 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27902 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27902 Output IDAT size = 27902 bytes (4372 bytes decrease) Output file size = 27980 bytes (4408 bytes = 13.61% decrease) ** Processing: figure/unnamed-chunk-3-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38154 bytes Input file size = 38280 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32171 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32171 Output IDAT size = 32171 bytes (5983 bytes decrease) Output file size = 32249 bytes (6031 bytes = 15.75% decrease) ** Processing: figure/unnamed-chunk-4-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49579 bytes Input file size = 49729 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40397 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40397 Output IDAT size = 40397 bytes (9182 bytes decrease) Output file size = 40475 bytes (9254 bytes = 18.61% decrease) Quitting from lines 155-161 [unnamed-chunk-5] (sparse.Rmd) Error: processing vignette 'sparse.Rmd' failed with diagnostics: kilobytes is not a valid unit; argument names of predict must be one of these valid units: length, seconds --- failed re-building ‘sparse.Rmd’ SUMMARY: processing the following file failed: ‘sparse.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64

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