CRAN Package Check Results for Maintainer ‘Bangyou Zheng <bangyou.zheng at csiro.au>’

Last updated on 2024-11-24 15:49:45 CET.

Package	NOTE	OK
BWGS	10	3
expDB	2	11
rapsimng		13
rtiddlywiki	10	3
weaana		13

Package BWGS

Current CRAN status: NOTE: 10, OK: 3

Version: 0.2.1
Check: Rd files
Result: NOTE checkRd: (-1) bwgs.cv.Rd:27: Lost braces; missing escapes or markup? 27 | \item{geno}{Matrix (n x m) of genotypes for the training population: n lines with m markers. Genotypes should be coded {-1, 0, 1}. Missing data are allowed and coded as NA.} | ^ checkRd: (-1) bwgs.cv.Rd:59: Lost braces; missing escapes or markup? 59 | \item{r2}{Coefficient of linkage disequilibrium (LD). Setting 0<r2<1 if the genotypic reduction method is in {LD or ANO+LD }.} | ^ checkRd: (-1) bwgs.predict.Rd:25: Lost braces; missing escapes or markup? 25 | \item{geno_train}{Matrix (n x m) of genotypes for the training population: n lines with m markers. Genotypes should be coded as {-1, 0, 1, NA}. Missing data are allowed and coded as NA.} | ^ checkRd: (-1) bwgs.predict.Rd:29: Lost braces; missing escapes or markup? 29 | \item{geno_target}{Matrix (z x m) of genotypes for the target population: z lines with the same m markers as in geno_train. Genotypes should be coded as {-1, 0, 1, NA}. Missing data are allowed and coded as NA. Other arguments are identical to those of bwgs.cv, except pop_reduct_method, nTimes and nFolds, since the prediction is run only once, using the whole training population for model estimation, then applied to the target population.} | ^ checkRd: (-1) bwgs.predict.Rd:49: Lost braces; missing escapes or markup? 49 | \item{r2}{Coefficient of linkage disequilibrium (LD). Setting 0<r2<1 if the genotypic reduction method is in {LD or ANO+LD }.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package expDB

Current CRAN status: NOTE: 2, OK: 11

Version: 0.1.0
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘tidyverse’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package rapsimng

Current CRAN status: OK: 13

Package rtiddlywiki

Current CRAN status: NOTE: 10, OK: 3

Version: 0.1.0
Check: Rd files
Result: NOTE checkRd: (-1) tw_options.Rd:22: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package weaana

Current CRAN status: OK: 13