CRAN Package Check Results for Package bcfrailph

Last updated on 2024-12-22 13:48:18 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.1	14.06	94.35	108.41	NOTE
r-devel-linux-x86_64-debian-gcc	0.1.1	8.84	64.42	73.26	NOTE
r-devel-linux-x86_64-fedora-clang	0.1.1			176.59	NOTE
r-devel-linux-x86_64-fedora-gcc	0.1.1			168.35	NOTE
r-devel-windows-x86_64	0.1.1	13.00	101.00	114.00	NOTE
r-patched-linux-x86_64	0.1.1	14.16	91.77	105.93	NOTE
r-release-linux-x86_64	0.1.1	14.17	90.94	105.11	NOTE
r-release-macos-arm64	0.1.1			47.00	NOTE
r-release-macos-x86_64	0.1.1			71.00	NOTE
r-release-windows-x86_64	0.1.1	15.00	112.00	127.00	NOTE
r-oldrel-macos-arm64	0.1.1			52.00	OK
r-oldrel-macos-x86_64	0.1.1			86.00	OK
r-oldrel-windows-x86_64	0.1.1	16.00	126.00	142.00	OK

Check Details

Version: 0.1.1
Check: Rd files
Result: NOTE checkRd: (-1) bcfrailph.Rd:35: Lost braces; missing escapes or markup? 35 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.} | ^ checkRd: (-1) bcfrailph.Rd:36: Lost braces; missing escapes or markup? 36 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.} | ^ checkRd: (-1) bcfrailph.Rd:37: Lost braces; missing escapes or markup? 37 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameters.} | ^ checkRd: (-1) bcfrailph.Rd:42: Lost braces; missing escapes or markup? 42 | \item \code{X}-{Matrix of observed covariates.} | ^ checkRd: (-1) bcfrailph.Rd:43: Lost braces; missing escapes or markup? 43 | \item \code{time}-{the observed survival time.} | ^ checkRd: (-1) bcfrailph.Rd:44: Lost braces; missing escapes or markup? 44 | \item \code{censor}-{censoring indicator.} | ^ checkRd: (-1) bcfrailph.Rd:45: Lost braces; missing escapes or markup? 45 | \item \code{resid}-{the martingale residuals.} | ^ checkRd: (-1) bcfrailph.Rd:46: Lost braces; missing escapes or markup? 46 | \item \code{lin.prid}-{the vector of linear predictors.} | ^ checkRd: (-1) bcfrailph.Rd:47: Lost braces; missing escapes or markup? 47 | \item \code{frail}-{estimated Frailty values.} | ^ checkRd: (-1) bcfrailph.Rd:48: Lost braces; missing escapes or markup? 48 | \item \code{iteration}-{Number of outer iterations.} | ^ checkRd: (-1) bcfrailph.Rd:49: Lost braces; missing escapes or markup? 49 | \item \code{e.time}-{the vector of unique event times.} | ^ checkRd: (-1) bcfrailph.Rd:50: Lost braces; missing escapes or markup? 50 | \item \code{n.event}- {the number of events at each of the unique event times.} | ^ checkRd: (-1) bcfrailph.Rd:51: Lost braces; missing escapes or markup? 51 | \item \code{convergence}-{an indicator, 1 if converge and 0 otherwise.} | ^ checkRd: (-1) bcfrailph.Rd:52: Lost braces; missing escapes or markup? 52 | \item \code{history}-{an array containing records of estimates and other information on each iterations.} | ^ checkRd: (-1) fitbccv.gammasp.Rd:32: Lost braces; missing escapes or markup? 32 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.} | ^ checkRd: (-1) fitbccv.gammasp.Rd:33: Lost braces; missing escapes or markup? 33 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.} | ^ checkRd: (-1) fitbccv.gammasp.Rd:34: Lost braces; missing escapes or markup? 34 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameters.} | ^ checkRd: (-1) fitbccv.gammasp.Rd:39: Lost braces; missing escapes or markup? 39 | \item \code{X}-{Matrix of observed covariates.} | ^ checkRd: (-1) fitbccv.gammasp.Rd:40: Lost braces; missing escapes or markup? 40 | \item \code{time}-{the observed survival time.} | ^ checkRd: (-1) fitbccv.gammasp.Rd:41: Lost braces; missing escapes or markup? 41 | \item \code{censor}-{censoring indicator.} | ^ checkRd: (-1) fitbccv.gammasp.Rd:42: Lost braces; missing escapes or markup? 42 | \item \code{resid}-{the martingale residuals.} | ^ checkRd: (-1) fitbccv.gammasp.Rd:43: Lost braces; missing escapes or markup? 43 | \item \code{lin.prid}-{the vector of linear predictors.} | ^ checkRd: (-1) fitbccv.gammasp.Rd:44: Lost braces; missing escapes or markup? 44 | \item \code{frail}-{estimated Frailty values.} | ^ checkRd: (-1) fitbccv.gammasp.Rd:45: Lost braces; missing escapes or markup? 45 | \item \code{iteration}-{Number of outer iterations.} | ^ checkRd: (-1) fitbccv.gammasp.Rd:46: Lost braces; missing escapes or markup? 46 | \item \code{e.time}-{the vector of unique event times.} | ^ checkRd: (-1) fitbccv.gammasp.Rd:47: Lost braces; missing escapes or markup? 47 | \item \code{n.event}- {the number of events at each of the unique event times.} | ^ checkRd: (-1) fitbccv.gammasp.Rd:48: Lost braces; missing escapes or markup? 48 | \item \code{convergence}-{an indicator, 1 if converge and 0 otherwise.} | ^ checkRd: (-1) fitbccv.gammasp.Rd:49: Lost braces; missing escapes or markup? 49 | \item \code{history}-{an array containing records of estimates and other information on each iterations.} | ^ checkRd: (-1) fitbccv.lognsp.Rd:21: Lost braces; missing escapes or markup? 21 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.} | ^ checkRd: (-1) fitbccv.lognsp.Rd:22: Lost braces; missing escapes or markup? 22 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.} | ^ checkRd: (-1) fitbccv.lognsp.Rd:23: Lost braces; missing escapes or markup? 23 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameters.} | ^ checkRd: (-1) fitbccv.lognsp.Rd:28: Lost braces; missing escapes or markup? 28 | \item \code{X}-{Matrix of observed covariates.} | ^ checkRd: (-1) fitbccv.lognsp.Rd:29: Lost braces; missing escapes or markup? 29 | \item \code{time}-{the observed survival time.} | ^ checkRd: (-1) fitbccv.lognsp.Rd:30: Lost braces; missing escapes or markup? 30 | \item \code{censor}-{censoring indicator.} | ^ checkRd: (-1) fitbccv.lognsp.Rd:31: Lost braces; missing escapes or markup? 31 | \item \code{resid}-{the martingale residuals.} | ^ checkRd: (-1) fitbccv.lognsp.Rd:32: Lost braces; missing escapes or markup? 32 | \item \code{lin.prid}-{the vector of linear predictors.} | ^ checkRd: (-1) fitbccv.lognsp.Rd:33: Lost braces; missing escapes or markup? 33 | \item \code{frail}-{estimated Frailty values.} | ^ checkRd: (-1) fitbccv.lognsp.Rd:34: Lost braces; missing escapes or markup? 34 | \item \code{iteration}-{Number of outer iterations.} | ^ checkRd: (-1) fitbccv.lognsp.Rd:35: Lost braces; missing escapes or markup? 35 | \item \code{e.time}-{the vector of unique event times.} | ^ checkRd: (-1) fitbccv.lognsp.Rd:36: Lost braces; missing escapes or markup? 36 | \item \code{n.event}- {the number of events at each of the unique event times.} | ^ checkRd: (-1) fitbccv.lognsp.Rd:37: Lost braces; missing escapes or markup? 37 | \item \code{convergence}-{an indicator, 1 if converge and 0 otherwise.} | ^ checkRd: (-1) fitbccv.lognsp.Rd:38: Lost braces; missing escapes or markup? 38 | \item \code{history}-{an array containing records of estimates and other information on each iterations.} | ^ checkRd: (-1) shrgamsp.Rd:32: Lost braces; missing escapes or markup? 32 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.} | ^ checkRd: (-1) shrgamsp.Rd:33: Lost braces; missing escapes or markup? 33 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.} | ^ checkRd: (-1) shrgamsp.Rd:34: Lost braces; missing escapes or markup? 34 | \item \code{vcov}- {Variance Covariance matrix of the Estimated Covariate coefficients obtained from the observed information matrix.} | ^ checkRd: (-1) shrgamsp.Rd:35: Lost braces; missing escapes or markup? 35 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameter.} | ^ checkRd: (-1) shrgamsp.Rd:40: Lost braces; missing escapes or markup? 40 | \item \code{X}-{Matrix of observed covariates.} | ^ checkRd: (-1) shrgamsp.Rd:41: Lost braces; missing escapes or markup? 41 | \item \code{time}-{the observed survival time.} | ^ checkRd: (-1) shrgamsp.Rd:42: Lost braces; missing escapes or markup? 42 | \item \code{censor}-{censoring indicator.} | ^ checkRd: (-1) shrgamsp.Rd:43: Lost braces; missing escapes or markup? 43 | \item \code{resid}-{the martingale residuals.} | ^ checkRd: (-1) shrgamsp.Rd:44: Lost braces; missing escapes or markup? 44 | \item \code{lin.prid}-{the vector of linear predictors.} | ^ checkRd: (-1) shrgamsp.Rd:45: Lost braces; missing escapes or markup? 45 | \item \code{frail}-{estimated Frailty values.} | ^ checkRd: (-1) shrgamsp.Rd:46: Lost braces; missing escapes or markup? 46 | \item \code{iteration}-{Number of outer iterations.} | ^ checkRd: (-1) shrgamsp.Rd:47: Lost braces; missing escapes or markup? 47 | \item \code{e.time}-{the vector of unique event times.} | ^ checkRd: (-1) shrgamsp.Rd:48: Lost braces; missing escapes or markup? 48 | \item \code{n.event}- {the number of events at each of the unique event times.} | ^ checkRd: (-1) shrgamsp.Rd:49: Lost braces 49 | \item \code{convergence}-{an indicator of convergence . see \code{\link{nlminb}}.} | ^ checkRd: (-1) simbcfrailph.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simbcfrailph.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simbcfrailph.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simbcfrailph.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simbcfrailph.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simbcfrailph.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simbcfrailph.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simstdybcf.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simstdybcf.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simstdybcf.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simstdybcf.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simstdybcf.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simstdybcf.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simstdybcf.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 0.1.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: shrgamsp.Rd: coxph simstdybcf.Rd: coxph Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64