Last updated on 2025-03-26 11:53:23 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.1 | 2.10 | 51.69 | 53.79 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.1 | 1.27 | 32.73 | 34.00 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.1 | 85.04 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.2 | 82.59 | OK | |||
| r-devel-macos-arm64 | 1.2.2 | 37.00 | OK | |||
| r-devel-macos-x86_64 | 1.2.2 | 79.00 | OK | |||
| r-devel-windows-x86_64 | 1.2.1 | 4.00 | 88.00 | 92.00 | OK | |
| r-patched-linux-x86_64 | 1.2.1 | 2.34 | 44.84 | 47.18 | ERROR | |
| r-release-linux-x86_64 | 1.2.1 | 1.92 | 46.83 | 48.75 | OK | |
| r-release-macos-arm64 | 1.2.2 | 27.00 | ERROR | |||
| r-release-macos-x86_64 | 1.2.2 | 62.00 | OK | |||
| r-release-windows-x86_64 | 1.2.2 | 5.00 | 88.00 | 93.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.2 | 41.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.2.2 | 69.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.2.2 | 4.00 | 104.00 | 108.00 | OK |
Version: 1.2.1
Check: examples
Result: ERROR
Running examples in ‘bootImpute-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bootSmcfcs
> ### Title: Bootstrap then impute using smcfcs
> ### Aliases: bootSmcfcs
>
> ### ** Examples
>
> library(smcfcs)
Attaching package: ‘smcfcs’
The following object is masked from ‘package:bootImpute’:
ex_linquad
>
> head(ex_linquad)
y z x v
1 -0.3404639 -1.2053334 -1.2070657 -2.1808844
2 2.1699185 0.3014667 0.2774292 0.1777980
3 2.0293128 -1.5391452 1.0844412 0.9737062
4 6.6311247 0.6353707 -2.3456977 -1.1535031
5 3.9096291 0.7029518 0.4291247 -1.2267612
6 -0.5019313 -1.9058829 NA -0.5395874
> #bootstrap twice and impute each twice
> #in practice you should bootstrap many more times, e.g. at least 200
> imps <- bootSmcfcs(ex_linquad, nBoot=2, nImp=2,
+ smtype="lm", smformula="y~z+x+xsq",
+ method=c("","","norm","x^2",""), seed=564764)
Warning in bootImpute(obsdata, smcfcsImpM, nBoot = nBoot, nImp = nImp, M = nImp, :
It is recommended to use at least 200 bootstraps.
Error in smcfcs.core(originaldata, smtype, smformula, method, predictorMatrix, :
Method argument must have the same length as the number of columns in the data frame.
Calls: bootSmcfcs -> bootImpute -> impfun -> <Anonymous> -> smcfcs.core
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 1.2.2
Check: examples
Result: ERROR
Running examples in ‘bootImpute-Ex.R’ failed
The error most likely occurred in:
> ### Name: bootImpute
> ### Title: Bootstrap then impute an incomplete dataset
> ### Aliases: bootImpute
>
> ### ** Examples
>
> #this example shows how you can use bootImpute to impute using the mice
> #package. If you do want to impute using MICE you can instead use the
> #bootMice function, which essentially contains the code below
> library(mice)
Error: package or namespace load failed for ‘mice’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called ‘pan’
Execution halted
Flavor: r-release-macos-arm64
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(bootImpute)
>
> test_check("bootImpute")
Estimate Std. error 95% CI lower 95% CI upper p
(Intercept) 0.08137426 0.19129077 -0.2965280 0.4592765 6.711440e-01
x 0.87123930 0.16282446 0.5497412 1.1927374 2.902025e-07
x2 -0.01941161 0.06178557 -0.1422755 0.1034522 7.541639e-01
Estimate Std. error 95% CI lower 95% CI upper p
[1,] 1 0 NaN NaN NaN
Estimate Std. error 95% CI lower 95% CI upper p
(Intercept) 0.08137426 0.19129077 -0.2965280 0.4592765 6.711440e-01
x 0.87123930 0.16282446 0.5497412 1.1927374 2.902025e-07
x2 -0.01941161 0.06178557 -0.1422755 0.1034522 7.541639e-01
Estimate Std. error 95% CI lower 95% CI upper p
(Intercept) 0.08137426 0.19129077 -0.2965280 0.4592765 6.711440e-01
x 0.87123930 0.16282446 0.5497412 1.1927374 2.902025e-07
x2 -0.01941161 0.06178557 -0.1422755 0.1034522 7.541639e-01
Estimate Std. error 95% CI lower 95% CI upper p
(Intercept) 0.05996528 0.1594198 -0.2547882 0.3747187 7.072883e-01
x 0.86829902 0.1480554 0.5760088 1.1605892 2.330791e-08
Estimate Std. error 95% CI lower 95% CI upper p
(Intercept) 0.05996528 0.1594198 -0.2547882 0.3747187 7.072883e-01
x 0.86829902 0.1480554 0.5760088 1.1605892 2.330791e-08
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 9 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_bootImpute.r:147:3'): Testing bootMice works ─────────────────
`{ ... }` did not produce any warnings.
── Error ('test_bootImpute.r:160:7'): Testing bootSmcfcs works ─────────────────
Error: package or namespace load failed for 'mice' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called 'pan'
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_bootImpute.r:158:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─base::library(mice) at test_bootImpute.r:160:7
7. └─base::tryCatch(...)
8. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. └─value[[3L]](cond)
── Error ('test_parallel.R:73:5'): Test bootImpute runs using multiple cores with mice ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])`: there is no package called 'pan'
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_parallel.R:64:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─bootImpute::bootMice(...) at test_parallel.R:73:5
7. │ └─bootImpute::bootImpute(...)
8. │ └─bootImpute (local) impfun(obsdata, ...)
9. └─base::loadNamespace(x)
10. ├─base::namespaceImportFrom(...)
11. │ └─base::asNamespace(ns)
12. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
13. ├─base::namespaceImport(...)
14. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
15. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
16. └─base (local) withOneRestart(expr, restarts[[1L]])
17. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_parallel.R:87:5'): Test bootImpute runs using multiple cores with mice with extra arguments ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])`: there is no package called 'pan'
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_parallel.R:78:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─bootImpute::bootMice(...) at test_parallel.R:87:5
7. │ └─bootImpute::bootImpute(...)
8. │ └─bootImpute (local) impfun(obsdata, ...)
9. └─base::loadNamespace(x)
10. ├─base::namespaceImportFrom(...)
11. │ └─base::asNamespace(ns)
12. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
13. ├─base::namespaceImport(...)
14. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
15. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
16. └─base (local) withOneRestart(expr, restarts[[1L]])
17. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 9 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
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