CRAN Package Check Results for Maintainer ‘Christoph Heibl <christoph.heibl at gmx.net>’

Last updated on 2025-03-23 10:51:10 CET.

Package	WARN	NOTE	OK
ips	1	3	11

Package ips

Current CRAN status: WARN: 1, NOTE: 3, OK: 11

Version: 0.0.12
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: DNAbin2index.Rd: DNAbin EmptyCells.Rd: DNAbin code.simple.gaps.Rd: DNAbin collapseUnsupportedEdges.Rd: phylo combMyTree.Rd: phylo del.miss.Rd: DNAbin deleteGaps.Rd: DNAbin fixNodes.Rd: phylo, read.nexus forceEqualTipHeights.Rd: is.ultrametric, chronos index2DNAbin.Rd: DNAbin ips-package.Rd: ladderize, rotate ips.16S.Rd: DNAbin ips.28S.Rd: DNAbin ips.cox1.Rd: DNAbin mafft.Rd: phylo mafft.merge.Rd: DNAbin, AAbin, phylo mrbayes.Rd: DNAbin multistate.Rd: ace neighboringPairs.Rd: mst ntip.Rd: phylo pathd8.Rd: phylo phylo2mafft.Rd: phylo phylo2mst.Rd: phylo pis.Rd: DNAbin raxml.Rd: DNAbin, phylo raxml.partitions.Rd: DNAbin, cbind.DNAbin rbeauti.Rd: DNAbin read.Rd: cbind.DNAbin sister.Rd: phylo splitIntoClades.Rd: phylo terminalSisters.Rd: phylo tipHeights.Rd: phylo, branching.times traitRate.Rd: phylo, DNAbin, read.tree write.fas.Rd: DNAbin Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 0.0.12
Check: whether package can be installed
Result: WARN Found the following significant warnings: Rd warning: DNAbin2index.Rd:10: missing link ‘DNAbin’ Rd warning: EmptyCells.Rd:44: missing link ‘DNAbin’ Rd warning: EmptyCells.Rd:25: missing link ‘DNAbin’ Rd warning: EmptyCells.Rd:41: missing link ‘DNAbin’ Rd warning: code.simple.gaps.Rd:15: missing link ‘DNAbin’ Rd warning: code.simple.gaps.Rd:21: missing link ‘DNAbin’ Rd warning: collapseUnsupportedEdges.Rd:10: missing link ‘phylo’ Rd warning: collapseUnsupportedEdges.Rd:19: missing link ‘phylo’ Rd warning: combMyTree.Rd:10: missing link ‘phylo’ Rd warning: combMyTree.Rd:23: missing link ‘phylo’ Rd warning: del.miss.Rd:10: missing link ‘DNAbin’ Rd warning: deleteGaps.Rd:10: missing link ‘DNAbin’ Rd warning: deleteGaps.Rd:18: missing link ‘DNAbin’ Rd warning: fixNodes.Rd:9: missing link ‘phylo’ Rd warning: fixNodes.Rd:17: missing link ‘phylo’ Rd warning: fixNodes.Rd:27: missing link ‘phylo’ Rd warning: fixNodes.Rd:36: missing link ‘read.nexus’ Rd warning: forceEqualTipHeights.Rd:26: missing link ‘is.ultrametric’ Rd warning: forceEqualTipHeights.Rd:31: missing link ‘chronos’ Rd warning: index2DNAbin.Rd:10: missing link ‘DNAbin’ Rd warning: ips-package.Rd:18: missing link ‘ladderize’ Rd warning: ips-package.Rd:18: missing link ‘rotate’ Rd warning: ips.16S.Rd:10: missing link ‘DNAbin’ Rd warning: ips.28S.Rd:12: missing link ‘DNAbin’ Rd warning: ips.cox1.Rd:12: missing link ‘DNAbin’ Rd warning: mafft.Rd:53: missing link ‘phylo’ Rd warning: mafft.merge.Rd:10: missing link ‘DNAbin’ Rd warning: mafft.merge.Rd:11: missing link ‘AAbin’ Rd warning: mafft.merge.Rd:20: missing link ‘phylo’ Rd warning: mafft.merge.Rd:34: missing link ‘DNAbin’ Rd warning: mafft.merge.Rd:34: missing link ‘AAbin’ Rd warning: mrbayes.Rd:22: missing link ‘DNAbin’ Rd warning: multistate.Rd:63: missing link ‘ace’ Rd warning: neighboringPairs.Rd:10: missing link ‘mst’ Rd warning: ntip.Rd:10: missing link ‘phylo’ Rd warning: pathd8.Rd:10: missing link ‘phylo’ Rd warning: pathd8.Rd:22: missing link ‘phylo’ Rd warning: phylo2mafft.Rd:10: missing link ‘phylo’ Rd warning: phylo2mst.Rd:10: missing link ‘phylo’ Rd warning: pis.Rd:10: missing link ‘DNAbin’ Rd warning: raxml.Rd:26: missing link ‘DNAbin’ Rd warning: raxml.Rd:57: missing link ‘phylo’ Rd warning: raxml.partitions.Rd:11: missing link ‘DNAbin’ Rd warning: raxml.partitions.Rd:23: missing link ‘cbind.DNAbin’ Rd warning: rbeauti.Rd:22: missing link ‘DNAbin’ Rd warning: read.Rd:56: missing link ‘cbind.DNAbin’ Rd warning: sister.Rd:10: missing link ‘phylo’ Rd warning: splitIntoClades.Rd:10: missing link ‘phylo’ Rd warning: terminalSisters.Rd:10: missing link ‘phylo’ Rd warning: tipHeights.Rd:13: missing link ‘phylo’ Rd warning: tipHeights.Rd:23: missing link ‘branching.times’ Rd warning: traitRate.Rd:14: missing link ‘phylo’ Rd warning: traitRate.Rd:16: missing link ‘DNAbin’ Rd warning: traitRate.Rd:44: missing link ‘read.tree’ Rd warning: write.fas.Rd:26: missing link ‘DNAbin’ Flavor: r-patched-linux-x86_64