CRAN Package Check Results for Maintainer ‘Chun Li <cli77199 at usc.edu>’

Last updated on 2025-01-30 16:48:46 CET.

Package ERROR NOTE OK
cpmBigData 8 5
ormBigData 8 5
PResiduals 8 5

Package cpmBigData

Current CRAN status: ERROR: 8, OK: 5

Version: 0.0.1
Check: examples
Result: ERROR Running examples in ‘cpmBigData-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: ormBD > ### Title: Cumulative Probability Model for Big Data > ### Aliases: ormBD > > ### ** Examples > > ## generate a small example data and run one of the three methods > set.seed(1) > n <- 200 > x1 = rnorm(n); x2 = rnorm(n) > tmpdata = data.frame(x1 = x1, x2 = x2, y = rnorm(n) + x1 + 2*x2) > modbinning <- ormBD(y ~ x1 + x2, data = tmpdata, family = loglog, + approach = "binning", target_num = 100) Error: object 'loglog' not found Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.0.1
Check: examples
Result: ERROR Running examples in ‘cpmBigData-Ex.R’ failed The error most likely occurred in: > ### Name: ormBD > ### Title: Cumulative Probability Model for Big Data > ### Aliases: ormBD > > ### ** Examples > > ## generate a small example data and run one of the three methods > set.seed(1) > n <- 200 > x1 = rnorm(n); x2 = rnorm(n) > tmpdata = data.frame(x1 = x1, x2 = x2, y = rnorm(n) + x1 + 2*x2) > modbinning <- ormBD(y ~ x1 + x2, data = tmpdata, family = loglog, + approach = "binning", target_num = 100) Error: object 'loglog' not found Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64

Package ormBigData

Current CRAN status: ERROR: 8, OK: 5

Version: 0.0.1
Check: examples
Result: ERROR Running examples in ‘ormBigData-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: ormBD > ### Title: Cumulative Probability Model for Big Data > ### Aliases: ormBD > > ### ** Examples > > ## generate a small example data and run one of the three methods > set.seed(1) > n <- 200 > x1 = rnorm(n); x2 = rnorm(n) > tmpdata = data.frame(x1 = x1, x2 = x2, y = rnorm(n) + x1 + 2*x2) > modbinning <- ormBD(y ~ x1 + x2, data = tmpdata, family = loglog, + approach = "binning", target_num = 100) Error: object 'loglog' not found Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.0.1
Check: examples
Result: ERROR Running examples in ‘ormBigData-Ex.R’ failed The error most likely occurred in: > ### Name: ormBD > ### Title: Cumulative Probability Model for Big Data > ### Aliases: ormBD > > ### ** Examples > > ## generate a small example data and run one of the three methods > set.seed(1) > n <- 200 > x1 = rnorm(n); x2 = rnorm(n) > tmpdata = data.frame(x1 = x1, x2 = x2, y = rnorm(n) + x1 + 2*x2) > modbinning <- ormBD(y ~ x1 + x2, data = tmpdata, family = loglog, + approach = "binning", target_num = 100) Error: object 'loglog' not found Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64

Package PResiduals

Current CRAN status: ERROR: 8, NOTE: 5

Version: 1.0-1
Check: package subdirectories
Result: NOTE Problems with news in ‘NEWS.md’: No news entries found. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0-1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: cobot.Rd: Formula cocobot.Rd: Formula conditional_Spearman.Rd: Formula countbot.Rd: Formula megabot.Rd: Formula newpolr.Rd: stepAIC partial_Spearman.Rd: Formula presid.Rd: survreg, coxph, polr, glm.nb, ols, cph, lrm, orm, psm, Glm Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 1.0-1
Check: examples
Result: ERROR Running examples in ‘PResiduals-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: conditional_Spearman > ### Title: Conditional Partial Spearman's Rank Correlation > ### Aliases: conditional_Spearman > > ### ** Examples > > data(PResidData) > library(rms) Loading required package: Hmisc Attaching package: ‘Hmisc’ The following objects are masked from ‘package:base’: format.pval, units > #### fitting cumulative link models for both Y and W > result <- conditional_Spearman(c|y~ x + w, conditional.by="w", + conditional.method="lm", conditional.formula="~rcs(w)", + fit.x="poisson",fit.y="orm", + data=PResidData, fisher=TRUE) Error in -as.matrix(mod$info.matrix) : invalid argument to unary operator Calls: conditional_Spearman -> orm.scores Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0-1
Check: examples
Result: ERROR Running examples in ‘PResiduals-Ex.R’ failed The error most likely occurred in: > ### Name: conditional_Spearman > ### Title: Conditional Partial Spearman's Rank Correlation > ### Aliases: conditional_Spearman > > ### ** Examples > > data(PResidData) > library(rms) Loading required package: Hmisc Attaching package: ‘Hmisc’ The following objects are masked from ‘package:base’: format.pval, units > #### fitting cumulative link models for both Y and W > result <- conditional_Spearman(c|y~ x + w, conditional.by="w", + conditional.method="lm", conditional.formula="~rcs(w)", + fit.x="poisson",fit.y="orm", + data=PResidData, fisher=TRUE) Error in -as.matrix(mod$info.matrix) : invalid argument to unary operator Calls: conditional_Spearman -> orm.scores Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.