Last updated on 2025-01-30 16:48:47 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| ecocomDP | 1 | 2 | 10 |
| EDIutils | 13 |
Current CRAN status: ERROR: 1, NOTE: 2, OK: 10
Version: 1.3.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [13s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ecocomDP)
>
> test_check("ecocomDP")
[ FAIL 122 | WARN 3 | SKIP 11 | PASS 469 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (11): 'test_convert_to_dwca.R:8:3', 'test_create_eml.R:8:3',
'test_read_data.R:6:3', 'test_search_data.R:8:3', 'test_search_data.R:22:3',
'test_search_data.R:37:3', 'test_search_data.R:49:3',
'test_search_data.R:73:3', 'test_validate_arguments.R:322:3',
'test_validate_arguments.R:424:3', 'test_validate_data.R:421:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_flatten_data.R:108:5'): Non-required columns ───────────────────
Error in `dplyr::left_join(., tables$location %>% dplyr::select_if(not_all_NAs),
by = "location_id", suffix = c("", "_location"))`: Join columns in `x` must be present in the data.
✖ Problem with `location_id`.
Backtrace:
▆
1. ├─ecocomDP::flatten_data(tbls) at test_flatten_data.R:108:5
2. │ └─ecocomDP:::flatten_tables(data)
3. │ └─all_merged %>% ...
4. ├─dplyr::left_join(...)
5. └─dplyr:::left_join.data.frame(...)
6. └─dplyr:::join_mutate(...)
7. └─dplyr:::join_cols(...)
8. └─dplyr:::check_join_vars(by$x, x_names, by$condition, "x", error_call = error_call)
9. └─rlang::abort(bullets, call = error_call)
── Error ('test_read_data.R:73:3'): Reads from 1 local .rds ────────────────────
<vctrs_error_subscript_type/vctrs_error_subscript/rlang_error/error/condition>
Error in `data.list[[x]][[primary_key]]`: Can't extract column with `primary_key`.
✖ Subscript `primary_key` must be size 1, not 2.
Backtrace:
▆
1. └─ecocomDP::read_data(from = rdspath) at test_read_data.R:73:3
2. └─ecocomDP::validate_data(dataset = d)
3. └─ecocomDP:::validate_primary_keys(d)
4. └─base::lapply(...)
5. └─ecocomDP (local) FUN(X[[i]], ...)
6. ├─data.list[[x]][[primary_key]]
7. └─tibble:::`[[.tbl_df`(data.list[[x]], primary_key)
8. └─tibble:::tbl_subset2(x, j = i, j_arg = substitute(i))
9. └─tibble:::vectbl_as_col_location2(...)
10. ├─tibble:::subclass_col_index_errors(...)
11. │ └─base::withCallingHandlers(...)
12. └─vctrs::vec_as_location2(j, n, names, call = call)
13. └─vctrs:::result_get(...)
14. └─rlang::cnd_signal(x$err)
── Error ('test_read_data.R:106:3'): Reads from > 1 local .rds ─────────────────
<vctrs_error_subscript_type/vctrs_error_subscript/rlang_error/error/condition>
Error in `data.list[[x]][[primary_key]]`: Can't extract column with `primary_key`.
✖ Subscript `primary_key` must be size 1, not 2.
Backtrace:
▆
1. └─ecocomDP::read_data(from = rdspath) at test_read_data.R:106:3
2. └─ecocomDP::validate_data(dataset = d[[i]])
3. └─ecocomDP:::validate_primary_keys(d)
4. └─base::lapply(...)
5. └─ecocomDP (local) FUN(X[[i]], ...)
6. ├─data.list[[x]][[primary_key]]
7. └─tibble:::`[[.tbl_df`(data.list[[x]], primary_key)
8. └─tibble:::tbl_subset2(x, j = i, j_arg = substitute(i))
9. └─tibble:::vectbl_as_col_location2(...)
10. ├─tibble:::subclass_col_index_errors(...)
11. │ └─base::withCallingHandlers(...)
12. └─vctrs::vec_as_location2(j, n, names, call = call)
13. └─vctrs:::result_get(...)
14. └─rlang::cnd_signal(x$err)
── Error ('test_read_data.R:142:3'): Reads from 1 local .csv directories ───────
Error in `as.Date.default(x, ...)`: do not know how to convert 'x' to class "Date"
Backtrace:
▆
1. └─ecocomDP::read_data(from = tempdir()) at test_read_data.R:142:3
2. ├─lubridate::as_date(d[[x]]$tables[[y]][[z]])
3. └─lubridate::as_date(d[[x]]$tables[[y]][[z]])
4. ├─base::as.Date(x, ...)
5. └─base::as.Date.default(x, ...)
── Error ('test_read_data.R:168:3'): Reads from > 1 local .csv directories ─────
Error in `as.Date.default(x, ...)`: do not know how to convert 'x' to class "Date"
Backtrace:
▆
1. └─ecocomDP::read_data(from = tempdir()) at test_read_data.R:168:3
2. ├─lubridate::as_date(d[[x]]$tables[[y]][[z]])
3. └─lubridate::as_date(d[[x]]$tables[[y]][[z]])
4. ├─base::as.Date(x, ...)
5. └─base::as.Date.default(x, ...)
── Error ('test_read_data.R:198:3'): Reads tables with valid names in path ─────
Error in `as.Date.default(x, ...)`: do not know how to convert 'x' to class "Date"
Backtrace:
▆
1. └─ecocomDP::read_data(from = readpath) at test_read_data.R:198:3
2. ├─lubridate::as_date(d[[x]]$tables[[y]][[z]])
3. └─lubridate::as_date(d[[x]]$tables[[y]][[z]])
4. ├─base::as.Date(x, ...)
5. └─base::as.Date.default(x, ...)
── Error ('test_read_data.R:221:3'): Ignores tables with invalid names in path ──
Error in `as.Date.default(x, ...)`: do not know how to convert 'x' to class "Date"
Backtrace:
▆
1. ├─testthat::expect_warning(read_data(from = readpath), regexp = "Validation issues") at test_read_data.R:221:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─ecocomDP::read_data(from = readpath)
7. ├─lubridate::as_date(d[[x]]$tables[[y]][[z]])
8. └─lubridate::as_date(d[[x]]$tables[[y]][[z]])
9. ├─base::as.Date(x, ...)
10. └─base::as.Date.default(x, ...)
── Error ('test_read_data.R:236:3'): Has datetime parsing option ───────────────
<vctrs_error_subscript_type/vctrs_error_subscript/rlang_error/error/condition>
Error in `data.list[[x]][[primary_key]]`: Can't extract column with `primary_key`.
✖ Subscript `primary_key` must be size 1, not 2.
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test_read_data.R:236:3
2. │ └─base::withCallingHandlers(...)
3. └─ecocomDP::read_data(from = paste0(tempdir(), "/d.rds"), parse_datetime = TRUE)
4. └─ecocomDP::validate_data(dataset = d[[i]])
5. └─ecocomDP:::validate_primary_keys(d)
6. └─base::lapply(...)
7. └─ecocomDP (local) FUN(X[[i]], ...)
8. ├─data.list[[x]][[primary_key]]
9. └─tibble:::`[[.tbl_df`(data.list[[x]], primary_key)
10. └─tibble:::tbl_subset2(x, j = i, j_arg = substitute(i))
11. └─tibble:::vectbl_as_col_location2(...)
12. ├─tibble:::subclass_col_index_errors(...)
13. │ └─base::withCallingHandlers(...)
14. └─vctrs::vec_as_location2(j, n, names, call = call)
15. └─vctrs:::result_get(...)
16. └─rlang::cnd_signal(x$err)
── Failure ('test_validate_data.R:36:7'): validate_table_presence() ────────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:36:7'): validate_table_presence() ────────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:36:7'): validate_table_presence() ────────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:36:7'): validate_table_presence() ────────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:36:7'): validate_table_presence() ────────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:36:7'): validate_table_presence() ────────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:36:7'): validate_table_presence() ────────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:36:7'): validate_table_presence() ────────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:36:7'): validate_table_presence() ────────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:36:7'): validate_table_presence() ────────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:36:7'): validate_table_presence() ────────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:36:7'): validate_table_presence() ────────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:36:7'): validate_table_presence() ────────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:93:9'): validate_column_presence() ───────────
stringr::str_detect(...) is not TRUE
`actual`:
`expected`: TRUE
── Error ('test_validate_data.R:187:5'): validate_primary_keys() ───────────────
<subscriptOutOfBoundsError/error/condition>
Error in `.subset2(x, i, exact = exact)`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_null(validate_primary_keys(d)) at test_validate_data.R:187:5
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─ecocomDP:::validate_primary_keys(d)
5. └─base::lapply(...)
6. └─ecocomDP (local) FUN(X[[i]], ...)
7. ├─data.list[[x]][[primary_key]]
8. └─base::`[[.data.frame`(data.list[[x]], primary_key)
9. └─(function(x, i, exact) if (is.matrix(i)) as.matrix(x)[[i]] else .subset2(x, ...
── Failure ('test_validate_data.R:237:9'): validate_composite_keys() ───────────
stringr::str_detect(validate_composite_keys(d), "Composite keys. The composite keys composed of the columns .+") is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:237:9'): validate_composite_keys() ───────────
stringr::str_detect(validate_composite_keys(d), "Composite keys. The composite keys composed of the columns .+") is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test_validate_data.R:237:9'): validate_composite_keys() ───────────
stringr::str_detect(validate_composite_keys(d), "Composite keys. The composite keys composed of the columns .+") is not TRUE
`actual`:
`expected`: TRUE
── Error ('test_validate_data.R:259:5'): validate_referential_integrity() ──────
<subscriptOutOfBoundsError/error/condition>
Error in `.subset2(x, i, exact = exact)`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_null(validate_referential_integrity(d)) at test_validate_data.R:259:5
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─ecocomDP:::validate_referential_integrity(d)
5. └─base::lapply(...)
6. └─ecocomDP (local) FUN(X[[i]], ...)
7. ├─stats::na.omit(data.list[[x]][[primary_key]])
8. ├─data.list[[x]][[primary_key]]
9. └─base::`[[.data.frame`(data.list[[x]], primary_key)
10. └─(function(x, i, exact) if (is.matrix(i)) as.matrix(x)[[i]] else .subset2(x, ...
── Error ('test_validate_data.R:489:5'): validate_data ─────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `.subset2(x, i, exact = exact)`: subscript out of bounds
Backtrace:
▆
1. ├─base::suppressWarnings(validate_data(dataset = d)) at test_validate_data.R:489:5
2. │ └─base::withCallingHandlers(...)
3. └─ecocomDP::validate_data(dataset = d)
4. └─ecocomDP:::validate_primary_keys(d)
5. └─base::lapply(...)
6. └─ecocomDP (local) FUN(X[[i]], ...)
7. ├─data.list[[x]][[primary_key]]
8. └─base::`[[.data.frame`(data.list[[x]], primary_key)
9. └─(function(x, i, exact) if (is.matrix(i)) as.matrix(x)[[i]] else .subset2(x, ...
[ FAIL 122 | WARN 3 | SKIP 11 | PASS 469 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘taxize’
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Current CRAN status: OK: 13
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.