CRAN Package Check Results for Package conos

Last updated on 2024-11-24 15:49:22 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.5.2	151.95	225.96	377.91	OK
r-devel-linux-x86_64-debian-gcc	1.5.2	112.17	140.71	252.88	OK
r-devel-windows-x86_64	1.5.2	164.00	209.00	373.00	OK
r-patched-linux-x86_64	1.5.2	148.24	186.13	334.37	NOTE
r-release-linux-x86_64	1.5.2	141.79	187.15	328.94	NOTE
r-release-macos-arm64	1.5.2			150.00	NOTE
r-release-macos-x86_64	1.5.2			175.00	NOTE
r-release-windows-x86_64	1.5.2	151.00	206.00	357.00	NOTE
r-oldrel-macos-arm64	1.5.2			132.00	ERROR
r-oldrel-macos-x86_64	1.5.2			297.00	NOTE
r-oldrel-windows-x86_64	1.5.2	198.00	263.00	461.00	NOTE

Check Details

Version: 1.5.2
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'conosPanel', 'p2data' Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64

Version: 1.5.2
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'conosPanel', 'org.Mm.eg.db', 'p2data' Flavor: r-release-macos-arm64

Version: 1.5.2
Check: installed package size
Result: NOTE installed size is 11.2Mb sub-directories of 1Mb or more: libs 9.4Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.5.2
Check: examples
Result: ERROR Running examples in ‘conos-Ex.R’ failed The error most likely occurred in: > ### Name: Conos > ### Title: Conos R6 class > ### Aliases: Conos > > ### ** Examples > > > ## ------------------------------------------------ > ## Method `Conos$new` > ## ------------------------------------------------ > > con <- Conos$new(small_panel.preprocessed, n.cores=1) > > > ## ------------------------------------------------ > ## Method `Conos$buildGraph` > ## ------------------------------------------------ > > con <- Conos$new(small_panel.preprocessed, n.cores=1) > con$buildGraph(k=10, k.self=5, space='PCA', ncomps=10, n.odgenes=20, matching.method='mNN', + metric='angular', score.component.variance=TRUE, verbose=TRUE) found 0 out of 1 cached PCA space pairs ... running 1 additional PCA space pairs Error in irlba::irlba(x, nv = ncomps, nu = 0, center = cm, right_only = FALSE, : function 'as_cholmod_sparse' not provided by package 'Matrix' Calls: <Anonymous> ... FUN -> quickPlainPCA -> lapply -> FUN -> <Anonymous> Execution halted Flavor: r-oldrel-macos-arm64

Version: 1.5.2
Check: tests
Result: ERROR Running ‘testthat.R’ [3s/3s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(conos) Loading required package: Matrix Loading required package: igraph Attaching package: 'igraph' The following objects are masked from 'package:stats': decompose, spectrum The following object is masked from 'package:base': union > > testthat::test_check("conos") Attaching package: 'testthat' The following object is masked from 'package:igraph': compare [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_functions.R:15:1'): (code run outside of `test_that()`) ──────── Error in `irlba::irlba(x, nv = ncomps, nu = 0, center = cm, right_only = FALSE, reorth = TRUE)`: function 'as_cholmod_sparse' not provided by package 'Matrix' Backtrace: ▆ 1. ├─base::suppressWarnings(con$buildGraph(ncomps = 25)) at test_functions.R:15:1 2. │ └─base::withCallingHandlers(...) 3. └─con$buildGraph(ncomps = 25) 4. └─private$updatePairs(...) 5. └─sccore::plapply(...) 6. └─base::lapply(...) 7. └─conos (local) FUN(X[[i]], ...) 8. └─conos:::quickPlainPCA(...) 9. └─base::lapply(...) 10. └─conos (local) FUN(X[[i]], ...) 11. └─irlba::irlba(...) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ] Error: Test failures Execution halted Flavor: r-oldrel-macos-arm64

Version: 1.5.2
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'conosPanel', 'org.Mm.eg.db', 'p2data', 'rhdf5' Flavor: r-oldrel-macos-x86_64