CRAN Package Check Results for Maintainer ‘Dan Warren <dan.l.warren at gmail.com>’

Last updated on 2024-11-24 15:49:47 CET.

Package	ERROR	NOTE	OK
ENMTools	1		12
rwty		3	10

Package ENMTools

Current CRAN status: ERROR: 1, OK: 12

Version: 1.1.2
Check: examples
Result: ERROR Running examples in ‘ENMTools-Ex.R’ failed The error most likely occurred in: > ### Name: enmtools.maxent > ### Title: Takes an emtools.species object with presence and background > ### points, and builds a maxent model > ### Aliases: enmtools.maxent > > ### ** Examples > > if(check.extras("enmtools.maxent")) { + ## maxent is not working on some platforms so use try() + try(enmtools.maxent(iberolacerta.clade$species$monticola, env = euro.worldclim)) + } *** caught illegal operation *** address 0x17feb2f78, cause 'illegal trap' Traceback: 1: rJava::.jcall(mxe, "S", "fit", c("autorun", "-e", afn, "-o", dirout, "-s", pfn, args)) 2: .local(x, p, ...) 3: maxent(x, p, ...) 4: maxent(x, p, ...) 5: .local(x, p, ...) 6: dismo::maxent(raster::stack(env), p = analysis.df[analysis.df$presence == 1, 1:2], a = analysis.df[analysis.df$presence == 0, 1:2], ...) 7: dismo::maxent(raster::stack(env), p = analysis.df[analysis.df$presence == 1, 1:2], a = analysis.df[analysis.df$presence == 0, 1:2], ...) 8: withVisible(...elt(i)) 9: capture.output(this.mx <- dismo::maxent(raster::stack(env), p = analysis.df[analysis.df$presence == 1, 1:2], a = analysis.df[analysis.df$presence == 0, 1:2], ...)) 10: enmtools.maxent(iberolacerta.clade$species$monticola, env = euro.worldclim) 11: doTryCatch(return(expr), name, parentenv, handler) 12: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 13: tryCatchList(expr, classes, parentenv, handlers) 14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))}) 15: try(enmtools.maxent(iberolacerta.clade$species$monticola, env = euro.worldclim)) An irrecoverable exception occurred. R is aborting now ... Flavor: r-release-macos-arm64

Package rwty

Current CRAN status: NOTE: 3, OK: 10

Version: 1.0.2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: load.trees.Rd: read.nexus, read.tree Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64