CRAN Package Check Results for Package doolkit

Last updated on 2025-01-31 06:49:20 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.42.2	15.33	137.43	152.76	NOTE
r-devel-linux-x86_64-debian-gcc	1.42.2	10.25	102.28	112.53	NOTE
r-devel-linux-x86_64-fedora-clang	1.42.2			260.93	NOTE
r-devel-linux-x86_64-fedora-gcc	1.42.2			236.98	NOTE
r-devel-windows-x86_64	1.42.2	16.00	158.00	174.00	NOTE
r-patched-linux-x86_64	1.42.2	14.10	129.85	143.95	NOTE
r-release-linux-x86_64	1.42.2	14.10	126.69	140.79	NOTE
r-release-macos-arm64	1.42.2			65.00	NOTE
r-release-macos-x86_64	1.42.2			96.00	ERROR
r-release-windows-x86_64	1.42.2	17.00	166.00	183.00	NOTE
r-oldrel-macos-arm64	1.42.2			65.00	NOTE
r-oldrel-macos-x86_64	1.42.2			1803.00	NOTE
r-oldrel-windows-x86_64	1.42.2	23.00	195.00	218.00	NOTE

Check Details

Version: 1.42.2
Check: Rd files
Result: NOTE checkRd: (-1) dkprofile.Rd:64: Lost braces 64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)} | ^ checkRd: (-1) dne.Rd:45: Lost braces 45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)} | ^ checkRd: (-1) dne.Rd:47: Lost braces 47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)} | ^ checkRd: (-1) inclin.Rd:28: Lost braces 28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)} | ^ checkRd: (-1) oedist.Rd:43: Lost braces 43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)} | ^ checkRd: (-1) oedist.Rd:45: Lost braces 45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)} | ^ checkRd: (-1) oedist.Rd:47: Lost braces 47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)} | ^ checkRd: (-1) oedist.Rd:49: Lost braces 49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)} | ^ checkRd: (-1) opc.Rd:36: Lost braces 36 | \doi{10.1038/nature05433}{Evans et al. (2007)} | ^ checkRd: (-1) opcr.Rd:30: Lost braces 30 | \doi{10.1038/nature10880}{Wilson et al. (2012)} | ^ checkRd: (-1) rfi.Rd:34: Lost braces 34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)} | ^ checkRd: (-1) rfi.Rd:35: Lost braces 35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)} | ^ checkRd: (-1) rrate.Rd:34: Lost braces 34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)} | ^ checkRd: (-1) shape.index.Rd:44: Lost braces 44 | \doi{10.1029/TR013i001p00350}{Horton (1932)} | ^ checkRd: (-1) shape.index.Rd:46: Lost braces 46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)} | ^ checkRd: (-1) shape.index.Rd:48: Lost braces 48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 1.42.2
Check: installed package size
Result: NOTE installed size is 7.4Mb sub-directories of 1Mb or more: R 3.0Mb data 2.0Mb extdata 2.3Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.42.2
Check: examples
Result: ERROR Running examples in ‘doolkit-Ex.R’ failed The error most likely occurred in: > ### Name: dkcrop > ### Title: crop a mesh > ### Aliases: dkcrop > > ### ** Examples > > #Crop above a certain threshold: > mythreshold <- quantile(elev(dkmodel$basin), 0.5) > mypolynetwork <- poly.network(dkmodel$basin, elev(dkmodel$basin), + lwr.limit = mythreshold) > mynewmesh <- dkcrop(dkmodel$basin, mypolynetwork) > dkmap(mynewmesh, elev(mynewmesh)) > > #Crop the sharpest dental elements: > sharpmesh <- dkcrop(dkmodel$basin, poly.network(dkmodel$basin, + Rvcg::vcgCurve(dkmodel$basin)$meanitmax, + lwr.limit = quantile(Rvcg::vcgCurve(dkmodel$basin)$meanitmax, 0.8), + min.size = 50)) > dkmap(sharpmesh, arc(sharpmesh), col = "arc", col.levels = 20, + min.range = -20, max.range = 20) > #Map of the sharpest elements' elevation, slope and orientation; > dkmap(sharpmesh, elev(sharpmesh), col = "elev") *** caught segfault *** address 0x3b4550be85a8, cause 'memory not mapped' Traceback: 1: plot.xy(xy, type, ...) 2: plot.default(x = plotx, y = ploty, pch = 95, bty = "n", xaxs = "r", xaxt = "n", col = c("transparent", rep(Colpalette, each = 100)), xlab = "", ylab = legend.lab, main = main, sub = sub, col.main = col.main, col.axis = col.axis, col.lab = col.lab, col.sub = col.sub, cex = cex, cex.main = cex.main, cex.axis = cex.axis, cex.sub = cex.sub, cex.lab = cex.lab, family = family, font.main = font.main, font.axis = font.axis) 3: graphics::plot(x = plotx, y = ploty, pch = 95, bty = "n", xaxs = "r", xaxt = "n", col = c("transparent", rep(Colpalette, each = 100)), xlab = "", ylab = legend.lab, main = main, sub = sub, col.main = col.main, col.axis = col.axis, col.lab = col.lab, col.sub = col.sub, cex = cex, cex.main = cex.main, cex.axis = cex.axis, cex.sub = cex.sub, cex.lab = cex.lab, family = family, font.main = font.main, font.axis = font.axis) 4: bg.make() 5: doTryCatch(return(expr), name, parentenv, handler) 6: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7: tryCatchList(expr, classes, parentenv, handlers) 8: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))}) 9: try(expression) 10: rgl::bgplot3d(bg.make()) 11: dkmap(sharpmesh, elev(sharpmesh), col = "elev") An irrecoverable exception occurred. R is aborting now ... Flavor: r-release-macos-x86_64