Last updated on 2025-01-30 20:48:25 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.0 | 6.82 | 113.87 | 120.69 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.0 | 4.50 | 44.72 | 49.22 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.0 | 198.66 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.0 | 171.03 | OK | |||
| r-devel-windows-x86_64 | 1.2.0 | 8.00 | 114.00 | 122.00 | OK | |
| r-patched-linux-x86_64 | 1.2.0 | 5.68 | 105.40 | 111.08 | OK | |
| r-release-linux-x86_64 | 1.2.0 | 6.01 | 106.19 | 112.20 | OK | |
| r-release-macos-arm64 | 1.2.0 | 56.00 | OK | |||
| r-release-macos-x86_64 | 1.2.0 | 160.00 | OK | |||
| r-release-windows-x86_64 | 1.2.0 | 7.00 | 118.00 | 125.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.0 | 53.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.2.0 | 118.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.2.0 | 10.00 | 141.00 | 151.00 | OK |
Version: 1.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/12s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(faersquarterlydata)
>
> test_check("faersquarterlydata")
Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2
Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2
retrieving resources/1_ADR22Q1_example.xml
retrieving resources/1_ADR22Q1_example.xml
retrieving resources/1_ADR22Q1_example.xml
retrieving resources/1_ADR22Q1_example.xml
retrieving resources/1_ADR22Q1_example.xml
1 out of 1
retrieving resources/1_ADR22Q1_example.xml
1 out of 1
retrieving resources/1_ADR22Q1_example.xml
saving resources/1_ADR22Q1_example.xml into cache: resources/cache/cache_xml.Rdata
1 out of 1
retrieving resources/1_ADR22Q1_example.xml
Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2
Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2
unzipping resources/xml_files/faers_xml_2012q4.zip
unzipping resources/ascii_files//faers_ascii_2022Q4.zip
[ FAIL 4 | WARN 36 | SKIP 0 | PASS 30 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-read_func_ascii.R:23:3'): retrieve_faersascii ──────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(.tbl, !!!funs)`: i In argument: `exp_dt = (structure(function (..., .x = ..1, .y = ..2, . = ..1) ...`.
Caused by error in `arrange_date()`:
! string contains letters
Backtrace:
▆
1. ├─testthat::expect_true(...) at test-read_func_ascii.R:23:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─faersquarterlydata::retrieve_faersascii(...)
5. │ └─... %>% ...
6. ├─dplyr::mutate_at(., vars(ends_with("_dt")), list(~arrange_date(.)))
7. │ ├─dplyr::mutate(.tbl, !!!funs)
8. │ └─dplyr:::mutate.data.frame(.tbl, !!!funs)
9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
10. │ ├─base::withCallingHandlers(...)
11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
12. │ └─mask$eval_all_mutate(quo)
13. │ └─dplyr (local) eval()
14. ├─faersquarterlydata (local) `<inln_cl_>`(exp_dt)
15. │ └─rlang::eval_bare(`_quo`, base::parent.frame())
16. ├─rlang (local) arrange_date(.)
17. ├─faersquarterlydata::arrange_date(.)
18. │ └─base::stop("string contains letters")
19. └─base::.handleSimpleError(`<fn>`, "string contains letters", base::quote(arrange_date(.)))
20. └─dplyr (local) h(simpleError(msg, call))
21. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Error ('test-read_func_ascii.R:49:3'): unify_tabular_ascii ──────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(.tbl, !!!funs)`: i In argument: `exp_dt = (structure(function (..., .x = ..1, .y = ..2, . = ..1) ...`.
Caused by error in `arrange_date()`:
! string contains letters
Backtrace:
▆
1. ├─faersquarterlydata::retrieve_faersascii(...) at test-read_func_ascii.R:49:3
2. │ └─... %>% ...
3. ├─dplyr::mutate_at(., vars(ends_with("_dt")), list(~arrange_date(.)))
4. │ ├─dplyr::mutate(.tbl, !!!funs)
5. │ └─dplyr:::mutate.data.frame(.tbl, !!!funs)
6. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
7. │ ├─base::withCallingHandlers(...)
8. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
9. │ └─mask$eval_all_mutate(quo)
10. │ └─dplyr (local) eval()
11. ├─faersquarterlydata (local) `<inln_cl_>`(exp_dt)
12. │ └─rlang::eval_bare(`_quo`, base::parent.frame())
13. ├─rlang (local) arrange_date(.)
14. ├─faersquarterlydata::arrange_date(.)
15. │ └─base::stop("string contains letters")
16. └─base::.handleSimpleError(`<fn>`, "string contains letters", base::quote(arrange_date(.)))
17. └─dplyr (local) h(simpleError(msg, call))
18. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Error ('test-ror.R:22:3'): estimate_ror_bygroup ─────────────────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(.tbl, !!!funs)`: i In argument: `exp_dt = (structure(function (..., .x = ..1, .y = ..2, . = ..1) ...`.
Caused by error in `arrange_date()`:
! string contains letters
Backtrace:
▆
1. ├─faersquarterlydata::retrieve_faersascii(ascii_dir = "resources/test_zip_ex_dir/ASCII") at test-ror.R:22:3
2. │ └─... %>% ...
3. ├─dplyr::mutate_at(., vars(ends_with("_dt")), list(~arrange_date(.)))
4. │ ├─dplyr::mutate(.tbl, !!!funs)
5. │ └─dplyr:::mutate.data.frame(.tbl, !!!funs)
6. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
7. │ ├─base::withCallingHandlers(...)
8. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
9. │ └─mask$eval_all_mutate(quo)
10. │ └─dplyr (local) eval()
11. ├─faersquarterlydata (local) `<inln_cl_>`(exp_dt)
12. │ └─rlang::eval_bare(`_quo`, base::parent.frame())
13. ├─rlang (local) arrange_date(.)
14. ├─faersquarterlydata::arrange_date(.)
15. │ └─base::stop("string contains letters")
16. └─base::.handleSimpleError(`<fn>`, "string contains letters", base::quote(arrange_date(.)))
17. └─dplyr (local) h(simpleError(msg, call))
18. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Error ('test-summary.R:3:3'): summary_faersdata ─────────────────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(.tbl, !!!funs)`: i In argument: `exp_dt = (structure(function (..., .x = ..1, .y = ..2, . = ..1) ...`.
Caused by error in `arrange_date()`:
! string contains letters
Backtrace:
▆
1. ├─faersquarterlydata::retrieve_faersascii(ascii_dir = "resources/test_zip_ex_dir/ASCII") at test-summary.R:3:3
2. │ └─... %>% ...
3. ├─dplyr::mutate_at(., vars(ends_with("_dt")), list(~arrange_date(.)))
4. │ ├─dplyr::mutate(.tbl, !!!funs)
5. │ └─dplyr:::mutate.data.frame(.tbl, !!!funs)
6. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
7. │ ├─base::withCallingHandlers(...)
8. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
9. │ └─mask$eval_all_mutate(quo)
10. │ └─dplyr (local) eval()
11. ├─faersquarterlydata (local) `<inln_cl_>`(exp_dt)
12. │ └─rlang::eval_bare(`_quo`, base::parent.frame())
13. ├─rlang (local) arrange_date(.)
14. ├─faersquarterlydata::arrange_date(.)
15. │ └─base::stop("string contains letters")
16. └─base::.handleSimpleError(`<fn>`, "string contains letters", base::quote(arrange_date(.)))
17. └─dplyr (local) h(simpleError(msg, call))
18. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
[ FAIL 4 | WARN 36 | SKIP 0 | PASS 30 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
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