Last updated on 2024-11-21 19:53:07 CET.
| Package | ERROR | OK |
|---|---|---|
| mobsim | 8 | 5 |
Current CRAN status: ERROR: 8, OK: 5
Version: 0.3.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
rare_curve.Rd: vegan
sample_quadrats.Rd: vegan
sim_sad.Rd: sads
spec_sample.Rd: vegan
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 0.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [23s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mobsim)
>
> test_check("mobsim")
Starting 2 test processes
[ FAIL 4 | WARN 1 | SKIP 11 | PASS 154 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (8): 'test_sampling-sample_quadrats().R:43:4',
'test_sampling-sample_quadrats().R:179:4',
'test_simulation_functions-poisson_process.r:2:4',
'test_simulation_functions-poisson_process.r:6:4',
'test_simulation_functions-sim_sad().R:31:4',
'test_simulation_functions-thomas_process.r:3:3',
'test_simulation_functions-thomas_process.r:7:3',
'test_simulation_functions-thomas_process.r:12:3'
• sample_quadrats() ensures that this does not happen (3):
'test_sampling-sampling_random_with_overlap.R:38:4',
'test_sampling-sampling_random_without_overlap_bruteforce.R:38:4',
'test_sampling-sampling_random_without_overlap_spatstat.R:38:4'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_patterns_of_biodiversity_functions.R:14:4'): rare_curve() - classes and dimensions are correct ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rc1, ptype = numeric(), size = N) at test_patterns_of_biodiversity_functions.R:14:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:24:4'): rare_curve() - handles 0 and NA values as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rare_curve(sad0), size = 50L) at test_patterns_of_biodiversity_functions.R:24:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:34:4'): div_rect() & div_rand_rect() - return expected value classes and length ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(div1, ptype = numeric(), size = 6) at test_patterns_of_biodiversity_functions.R:34:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_sampling-sample_quadrats().R:32:4'): dimensions are as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(comm_mat, size = 2L) at test_sampling-sample_quadrats().R:32:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 4 | WARN 1 | SKIP 11 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [17s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mobsim)
>
> test_check("mobsim")
Starting 2 test processes
[ FAIL 4 | WARN 1 | SKIP 11 | PASS 154 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (8): 'test_sampling-sample_quadrats().R:43:4',
'test_sampling-sample_quadrats().R:179:4',
'test_simulation_functions-poisson_process.r:2:4',
'test_simulation_functions-poisson_process.r:6:4',
'test_simulation_functions-sim_sad().R:31:4',
'test_simulation_functions-thomas_process.r:3:3',
'test_simulation_functions-thomas_process.r:7:3',
'test_simulation_functions-thomas_process.r:12:3'
• sample_quadrats() ensures that this does not happen (3):
'test_sampling-sampling_random_with_overlap.R:38:4',
'test_sampling-sampling_random_without_overlap_bruteforce.R:38:4',
'test_sampling-sampling_random_without_overlap_spatstat.R:38:4'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_patterns_of_biodiversity_functions.R:14:4'): rare_curve() - classes and dimensions are correct ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rc1, ptype = numeric(), size = N) at test_patterns_of_biodiversity_functions.R:14:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:24:4'): rare_curve() - handles 0 and NA values as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rare_curve(sad0), size = 50L) at test_patterns_of_biodiversity_functions.R:24:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:34:4'): div_rect() & div_rand_rect() - return expected value classes and length ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(div1, ptype = numeric(), size = 6) at test_patterns_of_biodiversity_functions.R:34:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_sampling-sample_quadrats().R:32:4'): dimensions are as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(comm_mat, size = 2L) at test_sampling-sample_quadrats().R:32:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 4 | WARN 1 | SKIP 11 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [36s/42s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mobsim)
>
> test_check("mobsim")
Starting 2 test processes
[ FAIL 4 | WARN 1 | SKIP 11 | PASS 154 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (8): 'test_sampling-sample_quadrats().R:43:4',
'test_sampling-sample_quadrats().R:179:4',
'test_simulation_functions-poisson_process.r:2:4',
'test_simulation_functions-poisson_process.r:6:4',
'test_simulation_functions-thomas_process.r:3:3',
'test_simulation_functions-thomas_process.r:7:3',
'test_simulation_functions-thomas_process.r:12:3',
'test_simulation_functions-sim_sad().R:31:4'
• sample_quadrats() ensures that this does not happen (3):
'test_sampling-sampling_random_with_overlap.R:38:4',
'test_sampling-sampling_random_without_overlap_bruteforce.R:38:4',
'test_sampling-sampling_random_without_overlap_spatstat.R:38:4'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_patterns_of_biodiversity_functions.R:14:4'): rare_curve() - classes and dimensions are correct ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rc1, ptype = numeric(), size = N) at test_patterns_of_biodiversity_functions.R:14:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:24:4'): rare_curve() - handles 0 and NA values as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rare_curve(sad0), size = 50L) at test_patterns_of_biodiversity_functions.R:24:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:34:4'): div_rect() & div_rand_rect() - return expected value classes and length ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(div1, ptype = numeric(), size = 6) at test_patterns_of_biodiversity_functions.R:34:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_sampling-sample_quadrats().R:32:4'): dimensions are as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(comm_mat, size = 2L) at test_sampling-sample_quadrats().R:32:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 4 | WARN 1 | SKIP 11 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.1
Check: tests
Result: ERROR
Running 'testthat.R' [11s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(mobsim)
>
> test_check("mobsim")
Starting 2 test processes
[ FAIL 4 | WARN 1 | SKIP 11 | PASS 154 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (8): 'test_sampling-sample_quadrats().R:43:4',
'test_sampling-sample_quadrats().R:179:4',
'test_simulation_functions-poisson_process.r:2:4',
'test_simulation_functions-poisson_process.r:6:4',
'test_simulation_functions-sim_sad().R:31:4',
'test_simulation_functions-thomas_process.r:3:3',
'test_simulation_functions-thomas_process.r:7:3',
'test_simulation_functions-thomas_process.r:12:3'
• sample_quadrats() ensures that this does not happen (3):
'test_sampling-sampling_random_with_overlap.R:38:4',
'test_sampling-sampling_random_without_overlap_bruteforce.R:38:4',
'test_sampling-sampling_random_without_overlap_spatstat.R:38:4'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_patterns_of_biodiversity_functions.R:14:4'): rare_curve() - classes and dimensions are correct ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rc1, ptype = numeric(), size = N) at test_patterns_of_biodiversity_functions.R:14:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:24:4'): rare_curve() - handles 0 and NA values as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rare_curve(sad0), size = 50L) at test_patterns_of_biodiversity_functions.R:24:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:34:4'): div_rect() & div_rand_rect() - return expected value classes and length ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(div1, ptype = numeric(), size = 6) at test_patterns_of_biodiversity_functions.R:34:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_sampling-sample_quadrats().R:32:4'): dimensions are as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(comm_mat, size = 2L) at test_sampling-sample_quadrats().R:32:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 4 | WARN 1 | SKIP 11 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [21s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mobsim)
>
> test_check("mobsim")
Starting 2 test processes
[ FAIL 4 | WARN 0 | SKIP 11 | PASS 154 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (8): 'test_sampling-sample_quadrats().R:43:4',
'test_sampling-sample_quadrats().R:179:4',
'test_simulation_functions-poisson_process.r:2:4',
'test_simulation_functions-poisson_process.r:6:4',
'test_simulation_functions-sim_sad().R:31:4',
'test_simulation_functions-thomas_process.r:3:3',
'test_simulation_functions-thomas_process.r:7:3',
'test_simulation_functions-thomas_process.r:12:3'
• sample_quadrats() ensures that this does not happen (3):
'test_sampling-sampling_random_with_overlap.R:38:4',
'test_sampling-sampling_random_without_overlap_bruteforce.R:38:4',
'test_sampling-sampling_random_without_overlap_spatstat.R:38:4'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_patterns_of_biodiversity_functions.R:14:4'): rare_curve() - classes and dimensions are correct ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rc1, ptype = numeric(), size = N) at test_patterns_of_biodiversity_functions.R:14:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:24:4'): rare_curve() - handles 0 and NA values as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rare_curve(sad0), size = 50L) at test_patterns_of_biodiversity_functions.R:24:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:34:4'): div_rect() & div_rand_rect() - return expected value classes and length ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(div1, ptype = numeric(), size = 6) at test_patterns_of_biodiversity_functions.R:34:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_sampling-sample_quadrats().R:32:4'): dimensions are as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(comm_mat, size = 2L) at test_sampling-sample_quadrats().R:32:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 4 | WARN 0 | SKIP 11 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mobsim)
>
> test_check("mobsim")
Starting 2 test processes
[ FAIL 4 | WARN 0 | SKIP 11 | PASS 154 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (8): 'test_sampling-sample_quadrats().R:43:4',
'test_sampling-sample_quadrats().R:179:4',
'test_simulation_functions-poisson_process.r:2:4',
'test_simulation_functions-poisson_process.r:6:4',
'test_simulation_functions-sim_sad().R:31:4',
'test_simulation_functions-thomas_process.r:3:3',
'test_simulation_functions-thomas_process.r:7:3',
'test_simulation_functions-thomas_process.r:12:3'
• sample_quadrats() ensures that this does not happen (3):
'test_sampling-sampling_random_with_overlap.R:38:4',
'test_sampling-sampling_random_without_overlap_bruteforce.R:38:4',
'test_sampling-sampling_random_without_overlap_spatstat.R:38:4'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_patterns_of_biodiversity_functions.R:14:4'): rare_curve() - classes and dimensions are correct ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rc1, ptype = numeric(), size = N) at test_patterns_of_biodiversity_functions.R:14:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:24:4'): rare_curve() - handles 0 and NA values as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rare_curve(sad0), size = 50L) at test_patterns_of_biodiversity_functions.R:24:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:34:4'): div_rect() & div_rand_rect() - return expected value classes and length ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(div1, ptype = numeric(), size = 6) at test_patterns_of_biodiversity_functions.R:34:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_sampling-sample_quadrats().R:32:4'): dimensions are as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(comm_mat, size = 2L) at test_sampling-sample_quadrats().R:32:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 4 | WARN 0 | SKIP 11 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.3.1
Check: tests
Result: ERROR
Running 'testthat.R' [12s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(mobsim)
>
> test_check("mobsim")
Starting 2 test processes
[ FAIL 4 | WARN 1 | SKIP 11 | PASS 154 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (8): 'test_sampling-sample_quadrats().R:43:4',
'test_sampling-sample_quadrats().R:179:4',
'test_simulation_functions-poisson_process.r:2:4',
'test_simulation_functions-poisson_process.r:6:4',
'test_simulation_functions-sim_sad().R:31:4',
'test_simulation_functions-thomas_process.r:3:3',
'test_simulation_functions-thomas_process.r:7:3',
'test_simulation_functions-thomas_process.r:12:3'
• sample_quadrats() ensures that this does not happen (3):
'test_sampling-sampling_random_with_overlap.R:38:4',
'test_sampling-sampling_random_without_overlap_bruteforce.R:38:4',
'test_sampling-sampling_random_without_overlap_spatstat.R:38:4'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_patterns_of_biodiversity_functions.R:14:4'): rare_curve() - classes and dimensions are correct ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rc1, ptype = numeric(), size = N) at test_patterns_of_biodiversity_functions.R:14:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:24:4'): rare_curve() - handles 0 and NA values as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rare_curve(sad0), size = 50L) at test_patterns_of_biodiversity_functions.R:24:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:34:4'): div_rect() & div_rand_rect() - return expected value classes and length ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(div1, ptype = numeric(), size = 6) at test_patterns_of_biodiversity_functions.R:34:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_sampling-sample_quadrats().R:32:4'): dimensions are as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(comm_mat, size = 2L) at test_sampling-sample_quadrats().R:32:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 4 | WARN 1 | SKIP 11 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.3.1
Check: tests
Result: ERROR
Running 'testthat.R' [16s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(mobsim)
>
> test_check("mobsim")
Starting 2 test processes
[ FAIL 4 | WARN 0 | SKIP 11 | PASS 154 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (8): 'test_sampling-sample_quadrats().R:43:4',
'test_sampling-sample_quadrats().R:179:4',
'test_simulation_functions-poisson_process.r:2:4',
'test_simulation_functions-poisson_process.r:6:4',
'test_simulation_functions-sim_sad().R:31:4',
'test_simulation_functions-thomas_process.r:3:3',
'test_simulation_functions-thomas_process.r:7:3',
'test_simulation_functions-thomas_process.r:12:3'
• sample_quadrats() ensures that this does not happen (3):
'test_sampling-sampling_random_with_overlap.R:38:4',
'test_sampling-sampling_random_without_overlap_bruteforce.R:38:4',
'test_sampling-sampling_random_without_overlap_spatstat.R:38:4'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_patterns_of_biodiversity_functions.R:14:4'): rare_curve() - classes and dimensions are correct ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rc1, ptype = numeric(), size = N) at test_patterns_of_biodiversity_functions.R:14:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:24:4'): rare_curve() - handles 0 and NA values as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(rare_curve(sad0), size = 50L) at test_patterns_of_biodiversity_functions.R:24:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_patterns_of_biodiversity_functions.R:34:4'): div_rect() & div_rand_rect() - return expected value classes and length ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(div1, ptype = numeric(), size = 6) at test_patterns_of_biodiversity_functions.R:34:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_sampling-sample_quadrats().R:32:4'): dimensions are as expected ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'vctrs'
Backtrace:
▆
1. ├─testthat::expect_vector(comm_mat, size = 2L) at test_sampling-sample_quadrats().R:32:4
2. │ └─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 4 | WARN 0 | SKIP 11 | PASS 154 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.