CRAN Package Check Results for Package fic

Last updated on 2026-10-24 05:51:15 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.0.1	10.88	195.46	206.34	OK
r-devel-linux-x86_64-debian-gcc	1.0.1	8.08	130.96	139.04	ERROR
r-devel-linux-x86_64-fedora-clang	1.0.1	8.00	148.52	156.52	NOTE
r-devel-linux-x86_64-fedora-gcc	1.0.1	8.00	137.79	145.79	NOTE
r-devel-windows-x86_64	1.0.1	14.00	292.00	306.00	OK
r-patched-linux-x86_64	1.0.1	11.40	185.80	197.20	OK
r-release-linux-x86_64	1.0.1	10.84	189.35	200.19	OK
r-release-macos-arm64	1.0.1	3.00	54.00	57.00	OK
r-release-macos-x86_64	1.0.1	8.00	229.00	237.00	OK
r-release-windows-x86_64	1.0.1	13.00	285.00	298.00	OK
r-oldrel-macos-arm64	1.0.1				OK
r-oldrel-macos-x86_64	1.0.1	7.00	234.00	241.00	OK
r-oldrel-windows-x86_64	1.0.1	18.00	310.00	328.00	OK

Check Details

Version: 1.0.1
Check: examples
Result: ERROR Running examples in ‘fic-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: all_inds.default > ### Title: Form indicator matrix describing all submodels of a general > ### linear wide model > ### Aliases: all_inds.default all_inds all_inds.lm all_inds.glm > ### all_inds.coxph > > ### ** Examples > > bwt.glm <- glm(low ~ lwtkg + age + smoke, data=birthwt, family="binomial") > all_inds(bwt.glm, inds0=c(1,0,0,0)) (Intercept) lwtkg age smoke 1000 1 0 0 0 1100 1 1 0 0 1010 1 0 1 0 1110 1 1 1 0 1001 1 0 0 1 1101 1 1 0 1 1011 1 0 1 1 1111 1 1 1 1 > > # note no intercept term in Cox models, so inds0 has two elements here > library(survival) > wide <- coxph(Surv(years, death==1) ~ sex + thick_centred, data=melanoma) > all_inds(wide, inds0=c(0,0)) Error in a$specials[[i]] : subscript out of bounds Calls: all_inds ... model.matrix -> model.matrix.coxph -> delete.response -> off Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.1
Check: tests
Result: ERROR Running ‘test_base.R’ [6s/6s] Running the tests in ‘tests/test_base.R’ failed. Complete output: > if (require("testthat")){ + test_check("fic") + } Loading required package: testthat Loading required package: fic Saving _problems/test_cox-19.R Error in X %*% par : non-conformable arguments Error in object$coefficients : $ operator is invalid for atomic vectors Error in X %*% par : non-conformable arguments Error in par %*% X : non-conformable arguments [ FAIL 1 | WARN 0 | SKIP 0 | PASS 46 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_cox.R:19:1'): (code run outside of `test_that()`) ────────────── <subscriptOutOfBoundsError/error/condition> Error in `a$specials[[i]]`: subscript out of bounds Backtrace: ▆ 1. └─fic::newdata_to_X(newdata, wide, intercept = FALSE) at test_cox.R:19:1 2. ├─stats::model.matrix(delete.response(tt), data = newdata, xlev = faclevs) 3. └─stats::delete.response(tt) 4. └─stats (local) off(a$specials[[i]]) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 46 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘fic.Rnw’ using knitr Quitting from fic.Rnw:729-732 [unnamed-chunk-13] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `a$specials[[i]]`: ! subscript out of bounds --- Backtrace: x 1. \-fic::expand_inds(c(1, 0, 0, 0, 0, 0, 0), wide) 2. +-stats::model.matrix(wide) 3. \-survival:::model.matrix.coxph(wide) 4. \-stats::delete.response(object$terms) 5. \-stats (local) off(a$specials[[i]]) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'fic.Rnw' failed with diagnostics: subscript out of bounds --- failed re-building ‘fic.Rnw’ --- re-building ‘linear.Rnw’ using knitr --- finished re-building ‘linear.Rnw’ --- re-building ‘loss.Rnw’ using knitr --- finished re-building ‘loss.Rnw’ --- re-building ‘multistate.Rnw’ using knitr --- finished re-building ‘multistate.Rnw’ --- re-building ‘skewnormal.Rnw’ using knitr Bibliography warnings for 'skewnormal': empty journal in cook1994introduction --- finished re-building ‘skewnormal.Rnw’ --- re-building ‘survival.Rnw’ using knitr Bibliography warnings for 'survival': string name "sim" is undefined empty journal in royston:parmar --- finished re-building ‘survival.Rnw’ SUMMARY: processing the following file failed: ‘fic.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.1
Check: dependencies in R code
Result: NOTE Namespaces in Imports field not imported from: ‘mgcv’ ‘numDeriv’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc