CRAN Package Check Results for Package fishboot

Last updated on 2025-04-24 21:50:49 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.0.0	12.54	105.14	117.68	OK
r-devel-linux-x86_64-debian-gcc	1.0.0	7.51	67.68	75.19	ERROR
r-devel-linux-x86_64-fedora-clang	1.0.0			182.25	OK
r-devel-linux-x86_64-fedora-gcc	1.0.0			170.44	OK
r-devel-windows-x86_64	1.0.0	13.00	112.00	125.00	OK
r-patched-linux-x86_64	1.0.0	11.65	97.51	109.16	OK
r-release-linux-x86_64	1.0.0	11.34	99.67	111.01	OK
r-release-macos-arm64	1.0.0			49.00	OK
r-release-macos-x86_64	1.0.0			99.00	OK
r-release-windows-x86_64	1.0.0	12.00	117.00	129.00	OK
r-oldrel-macos-arm64	1.0.0			55.00	OK
r-oldrel-macos-x86_64	1.0.0			103.00	OK
r-oldrel-windows-x86_64	1.0.0	16.00	133.00	149.00	OK

Check Details

Version: 1.0.0
Check: examples
Result: ERROR Running examples in ‘fishboot-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: grotag_boot > ### Title: Bootstrapped tag-and-recapture growth analysis > ### Aliases: grotag_boot > > ### ** Examples > > # Load example DB from fishmethods package > data(bonito, package = "fishmethods") > > # Run the example cited on ?grotag > fishmethods::grotag(L1 = bonito$L1, + L2 = bonito$L2, + T1 = bonito$T1, + T2 = bonito$T2, + alpha = 35, beta = 55, + design = list(nu = 1, m = 1,p = 1, sea = 1), + stvalue = list(sigma = 0.9, nu = 0.4, m = -1, p = 0.2, u = 0.4, w = 0.4), + upper = list(sigma = 5, nu = 1, m = 2, p = 0.5, u = 1, w = 1), + lower = list(sigma = 0, nu = 0, m = -2, p = 0.0, u = 0, w = 0), + control = list(maxit = 1e4)) $table Estimate SE Parameters NA NA Mean growth rates ga 11.000 0.7900 Mean growth rates gb 7.480 0.8900 Seasonal variation u 0.660 0.1280 w 0.653 0.0230 Growth variability nu 0.353 0.0570 Measurement error s 0.757 0.0720 m -0.725 0.1100 Outliers p 0.000 0.1061 NA NA -Log likelihood 205.300 NA AIC 426.700 NA $VBparms Estimate Parameters NA Linf 97.5125541 K 0.1935566 $correlation [,1] [,2] [,3] [,4] [,5] [,6] [1,] 1.00000000 0.35141892 0.005507470 -0.36432798 -0.604872370 -0.07619591 [2,] 0.35141892 1.00000000 0.028362028 -0.25786619 -0.385220133 -0.01109826 [3,] 0.00550747 0.02836203 1.000000000 -0.34337794 0.009501275 -0.17215202 [4,] -0.36432798 -0.25786619 -0.343377936 1.00000000 0.256738672 -0.17737134 [5,] -0.60487237 -0.38522013 0.009501275 0.25673867 1.000000000 0.05372794 [6,] -0.07619591 -0.01109826 -0.172152020 -0.17737134 0.053727937 1.00000000 [7,] -0.07994095 -0.24182797 -0.072780967 0.02018431 -0.120395274 0.07908537 [8,] -0.37072943 -0.09370576 0.060163171 -0.04358248 0.070311903 0.03322338 [,7] [,8] [1,] -0.07994095 -0.37072943 [2,] -0.24182797 -0.09370576 [3,] -0.07278097 0.06016317 [4,] 0.02018431 -0.04358248 [5,] -0.12039527 0.07031190 [6,] 0.07908537 0.03322338 [7,] 1.00000000 0.08063109 [8,] 0.08063109 1.00000000 $predicted [1] 1.97457444 0.10992873 0.41543494 0.29020907 0.30618020 1.97605160 [7] 0.38276996 0.90961574 1.05288414 1.77439912 7.30682772 0.03561399 [13] 0.45950204 1.74247324 5.61892891 0.57347482 1.30490258 0.93631824 [19] 0.72806317 0.61180193 0.30261608 0.69203460 2.05188715 1.28761104 [25] 0.37081101 0.27662104 1.34304293 0.76119087 0.54476041 0.53100555 [31] 0.51560221 0.69428332 5.00175351 6.03624838 4.51531250 1.69452783 [37] 0.88381676 2.14902181 3.77081612 5.02834914 1.91286488 0.06615485 [43] 0.38922083 2.85676251 4.51531250 6.90915968 0.57753504 0.83032348 [49] 3.00423180 0.65546980 0.35268455 0.62243192 0.42144660 0.35814140 [55] 0.44927130 0.72740595 0.64430951 0.90989781 5.22461312 0.90416317 [61] 2.50738132 0.96204340 0.22263271 0.25598446 0.00000000 0.05450419 [67] 0.05974371 0.38627302 1.95046001 0.36385291 0.46196234 1.58043517 [73] 1.80258827 0.01710754 0.23715732 21.65837612 3.08502753 8.51415900 [79] 2.31533839 9.07016188 8.76800247 5.19532525 2.87854263 4.36975041 [85] 10.21014254 2.98690598 0.10188418 3.98153483 0.38922083 0.27356657 [91] 4.89447120 4.52531267 0.30111613 1.96582335 1.45560009 1.25792782 [97] 0.52971488 1.19968198 3.12938814 1.07045770 2.39897756 1.32776492 [103] 2.01931570 0.69947260 0.81984359 1.08408556 0.70242471 1.90555091 [109] 0.56928080 0.85294874 1.74266759 0.33822709 0.60252811 0.55234880 [115] 1.05664943 1.35661045 3.02620997 0.97621807 2.64676255 3.61107300 [121] 0.22123406 0.11469336 0.12199911 10.14258682 8.63571351 5.86162647 [127] 3.96977975 3.63203406 2.11552483 4.77658960 3.81884548 4.40954408 [133] 3.64239909 1.76478556 2.55318634 4.40428483 3.24706306 2.36671466 $residuals [1] 1.725425558 0.090071265 -1.615434936 -0.290209066 -0.306180198 [6] -0.876051599 -0.382769964 -0.809615742 -0.252884138 -1.374399118 [11] -3.006827719 -1.735613993 -0.059502038 0.057526760 -0.418928911 [16] -1.873474816 0.395097420 -1.436318240 -1.128063172 -1.711801933 [21] -0.602616078 -1.692034605 -1.351887150 -3.187611037 -1.170811006 [26] -1.776621039 -0.943042934 -1.261190871 -0.444760413 -0.631005548 [31] -1.415602208 -0.294283316 0.598246493 1.263751622 3.184687496 [36] 0.305472170 -1.683816764 -1.049021810 1.229183876 -0.428349138 [41] -0.812864878 -0.066154846 0.010779173 -1.656762505 -2.015312504 [46] -1.609159684 -1.277535044 -1.530323482 1.795768203 -1.755469799 [51] -0.352684550 -0.622431917 -1.621446600 -0.558141396 -2.549271303 [56] -1.427405946 -1.944309507 -1.809897809 -1.124613122 -0.804163166 [61] -0.507381324 -0.962043395 -1.022632715 -0.855984457 -1.000000000 [66] -0.054504190 -0.059743712 -0.186273017 -1.450460013 -1.363852910 [71] -0.461962337 -1.880435166 -1.302588269 -1.517107541 -0.037157323 [76] 6.941623876 0.414972467 -6.214158996 -0.815338392 -2.870161885 [81] -6.568002471 -1.495325250 1.921457372 -0.469750412 1.389857456 [86] 1.213094022 -0.001884185 -1.481534830 0.010779173 0.726433431 [91] -1.394471198 -2.125312669 -0.101116132 -1.765823351 1.044399908 [96] -1.057927817 -1.329714879 -0.899681985 -1.929388144 0.429542302 [101] -0.398977556 -1.027764919 -1.219315705 0.500527398 -0.119843594 [106] 0.815914440 -0.402424711 -1.905550908 0.030719199 -0.852948744 [111] -1.242667588 -0.038227089 -0.202528108 -0.752348802 -1.856649430 [116] -0.756610451 -2.226209975 -1.976218075 -0.346762546 -1.511072999 [121] -0.421234057 0.385306639 -0.321999105 0.057413180 3.464286488 [126] -4.061626468 -1.469779750 0.867965939 -0.115524835 -1.376589604 [131] -1.318845476 -0.609544081 -1.242399087 1.335214440 -0.653186339 [136] -0.004284825 -0.547063060 1.433285341 > > # Run the example using grotag_boot > res <- grotag_boot(L1 = bonito$L1, + L2 = bonito$L2, + T1 = bonito$T1, + T2 = bonito$T2, + alpha = 35, beta = 55, + design = list(nu = 1, m = 1,p = 1, sea = 1), + stvalue = list(sigma = 0.9, nu = 0.4, m = -1, p = 0.2, u = 0.4, w = 0.4), + upper = list(sigma = 5, nu = 1, m = 2, p = 0.5, u = 1, w = 1), + lower = list(sigma = 0, nu = 0, m = -2, p = 0.0, u = 0, w = 0), + control = list(maxit = 1e4), + nresamp = 3, na_action = "narm") Error in names(x) <- value : 'names' attribute [7] must be the same length as the vector [0] Calls: grotag_boot -> colnames<- Execution halted Flavor: r-devel-linux-x86_64-debian-gcc