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Last updated on 2026-09-18 11:51:19 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0 | 7.30 | 283.81 | 291.11 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0 | 6.02 | 111.30 | 117.32 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0 | 202.84 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0 | 207.52 | NOTE | |||
| r-devel-windows-x86_64 | 1.0 | 10.00 | 278.00 | 288.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0 | 9.49 | 265.31 | 274.80 | OK | |
| r-release-linux-x86_64 | 1.0 | 8.16 | 264.39 | 272.55 | OK | |
| r-release-macos-arm64 | 1.0 | 2.00 | 147.00 | 149.00 | OK | |
| r-release-macos-x86_64 | 1.0 | 6.00 | 361.00 | 367.00 | OK | |
| r-release-windows-x86_64 | 1.0 | 10.00 | 383.00 | 393.00 | OK | |
| r-oldrel-macos-arm64 | 1.0 | 2.00 | 78.00 | 80.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0 | 6.00 | 668.00 | 674.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0 | 14.00 | 430.00 | 444.00 | OK |
Version: 1.0
Check: R code for possible problems
Result: NOTE
Found calls to structure() using deprecated special names:
fitnmr/R/fitnmr.R (.Names: 1)
fitnmr/R/resonance.R (.Names: 2)
'.Names' should be changed to 'names'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 1.0
Check: examples
Result: ERROR
Running examples in ‘fitnmr-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: contour_pipe
> ### Title: Plot Spectra Contours
> ### Aliases: contour_pipe
>
> ### ** Examples
>
> spec_file <- system.file("extdata", "t1", "1.ft2", package = "fitnmr")
> spec <- read_nmrpipe(spec_file, dim_order = "hx")
> contour_pipe(spec$int)
Warning in min(x) : no non-missing arguments to min; returning Inf
Warning in max(x) : no non-missing arguments to max; returning -Inf
Warning in min(x) : no non-missing arguments to min; returning Inf
Warning in max(x) : no non-missing arguments to max; returning -Inf
Error in plot.window(xlim, ylim, ...) : need finite 'xlim' values
Calls: contour_pipe ... <Anonymous> -> contour.default -> localPlotWindow -> plot.window
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘peak2d.Rmd’ using rmarkdown
Quitting from peak2d.Rmd:83-85 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.window()`:
! need finite 'xlim' values
---
Backtrace:
▆
1. └─fitnmr::contour_pipe(spec_list[[1]]$int)
2. ├─graphics::contour(...)
3. └─graphics::contour.default(...)
4. └─graphics (local) localPlotWindow(xlim, ylim, ...)
5. └─graphics::plot.window(xlim, ylim, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'peak2d.Rmd' failed with diagnostics:
need finite 'xlim' values
--- failed re-building ‘peak2d.Rmd’
--- re-building ‘peak2d_scripts.Rmd’ using rmarkdown
Quitting from peak2d_scripts.Rmd:149-151 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `spec_sub_list[[i]]$int[idx_1, idx_2]`:
! no 'dimnames' attribute for array
---
Backtrace:
▆
1. └─fitnmr::fit_peak_iter(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'peak2d_scripts.Rmd' failed with diagnostics:
no 'dimnames' attribute for array
--- failed re-building ‘peak2d_scripts.Rmd’
--- re-building ‘timeseries1d.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘timeseries1d.Rmd’
SUMMARY: processing the following files failed:
‘peak2d.Rmd’ ‘peak2d_scripts.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0
Check: examples
Result: ERROR
Running examples in 'fitnmr-Ex.R' failed
The error most likely occurred in:
> ### Name: contour_pipe
> ### Title: Plot Spectra Contours
> ### Aliases: contour_pipe
>
> ### ** Examples
>
> spec_file <- system.file("extdata", "t1", "1.ft2", package = "fitnmr")
> spec <- read_nmrpipe(spec_file, dim_order = "hx")
> contour_pipe(spec$int)
Warning in min(x) : no non-missing arguments to min; returning Inf
Warning in max(x) : no non-missing arguments to max; returning -Inf
Warning in min(x) : no non-missing arguments to min; returning Inf
Warning in max(x) : no non-missing arguments to max; returning -Inf
Error in plot.window(xlim, ylim, ...) : need finite 'xlim' values
Calls: contour_pipe ... <Anonymous> -> contour.default -> localPlotWindow -> plot.window
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'peak2d.Rmd' using rmarkdown
Quitting from peak2d.Rmd:83-85 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.window()`:
! need finite 'xlim' values
---
Backtrace:
▆
1. └─fitnmr::contour_pipe(spec_list[[1]]$int)
2. ├─graphics::contour(...)
3. └─graphics::contour.default(...)
4. └─graphics (local) localPlotWindow(xlim, ylim, ...)
5. └─graphics::plot.window(xlim, ylim, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'peak2d.Rmd' failed with diagnostics:
need finite 'xlim' values
--- failed re-building 'peak2d.Rmd'
--- re-building 'peak2d_scripts.Rmd' using rmarkdown
Quitting from peak2d_scripts.Rmd:149-151 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `spec_sub_list[[i]]$int[idx_1, idx_2]`:
! no 'dimnames' attribute for array
---
Backtrace:
▆
1. └─fitnmr::fit_peak_iter(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'peak2d_scripts.Rmd' failed with diagnostics:
no 'dimnames' attribute for array
--- failed re-building 'peak2d_scripts.Rmd'
--- re-building 'timeseries1d.Rmd' using rmarkdown
--- finished re-building 'timeseries1d.Rmd'
SUMMARY: processing the following files failed:
'peak2d.Rmd' 'peak2d_scripts.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64
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