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Last updated on 2026-10-24 11:51:01 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.0 | 13.60 | 337.38 | 350.98 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.0 | 8.73 | 228.30 | 237.03 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.0 | 10.00 | 224.52 | 234.52 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.0 | 9.00 | 217.45 | 226.45 | OK | |
| r-devel-windows-x86_64 | 0.2.0 | 16.00 | 306.00 | 322.00 | OK | |
| r-patched-linux-x86_64 | 0.2.0 | 14.19 | 316.45 | 330.64 | OK | |
| r-release-linux-x86_64 | 0.2.0 | 11.51 | 318.19 | 329.70 | OK | |
| r-release-macos-arm64 | 0.2.0 | 3.00 | 75.00 | 78.00 | OK | |
| r-release-macos-x86_64 | 0.2.0 | 9.00 | 230.00 | 239.00 | OK | |
| r-release-windows-x86_64 | 0.2.0 | 15.00 | 297.00 | 312.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.0 | 4.00 | 89.00 | 93.00 | OK | |
| r-oldrel-macos-x86_64 | 0.2.0 | 9.00 | 227.00 | 236.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.0 | 20.00 | 401.00 | 421.00 | OK |
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [148s/193s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(foresty)
>
> # Drawing a figure opens a device, and a device opened while the tests run is
> # the default one, which writes an Rplots.pdf into the test directory and
> # leaves it there. Sending that drawing to the null device instead keeps the
> # directory -- and the tarball built from it -- clean. Tests that need a device
> # of their own open and close it, and the null device is what they come back to.
> grDevices::pdf(NULL)
>
> test_check("foresty")
The model already contains the no2 by sex interaction; using it as it stands rather than updating it.
The model already contains the no2 by sex interaction; using it as it stands rather than updating it.
Saving _problems/test-model-classes-181.R
The model already contains the urbanicity by sex interaction; using it as it stands rather than updating it.
The model already contains the no2 by sex interaction; using it as it stands rather than updating it.
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
refitting model(s) with ML (instead of REML)
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
Saving _problems/test-person-time-7.R
The standard errors are robust, and the likelihood ratio test takes no account of them, so the joint Wald test is reported instead. Ask for it with `test = "lrt"` to have it anyway.
Saving _problems/test-robust-146.R
[ FAIL 3 | WARN 0 | SKIP 54 | PASS 898 ]
══ Skipped tests (54) ══════════════════════════════════════════════════════════
• On CRAN (54): 'test-app.R:34:3', 'test-app.R:58:3', 'test-app.R:70:3',
'test-app.R:85:3', 'test-app.R:94:3', 'test-app.R:112:3', 'test-app.R:119:3',
'test-app.R:159:3', 'test-app.R:204:3', 'test-app.R:235:3',
'test-app.R:288:3', 'test-app.R:320:3', 'test-app.R:356:3',
'test-app.R:414:3', 'test-app.R:445:3', 'test-app.R:486:3',
'test-app.R:522:3', 'test-app.R:537:3', 'test-app.R:585:3',
'test-app.R:609:3', 'test-app.R:629:3', 'test-app.R:649:3',
'test-app.R:673:3', 'test-app.R:694:3', 'test-app.R:723:3',
'test-app.R:738:3', 'test-app.R:791:3', 'test-app.R:819:3',
'test-app.R:835:3', 'test-app.R:855:3', 'test-app.R:921:3',
'test-app.R:981:3', 'test-app.R:1011:3', 'test-app.R:1026:3',
'test-app.R:1044:3', 'test-app.R:1071:3', 'test-app.R:1093:3',
'test-app.R:1114:3', 'test-app.R:1141:3', 'test-app.R:1163:3',
'test-app.R:1206:3', 'test-app.R:1238:3', 'test-app.R:1303:3',
'test-app.R:1369:3', 'test-app.R:1409:3', 'test-app.R:1444:3',
'test-app.R:1476:3', 'test-app.R:1517:3', 'test-app.R:1568:3',
'test-app.R:1614:3', 'test-app.R:1639:3', 'test-app.R:1653:3',
'test-app.R:1690:3', 'test-app.R:1733:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-model-classes.R:181:3'): estimates survive a Cox model and count its events ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─foresty::foresty_interaction(fit, exposure = "no2", interaction = "sex") at test-model-classes.R:181:3
2. ├─base::do.call(...)
3. └─base::lapply(...)
4. └─foresty (local) FUN(X[[i]], ...)
5. └─foresty:::fy_exposure_estimates(...)
6. └─foresty:::fy_contrast_matrix(...)
7. └─base::lapply(...)
8. └─foresty (local) FUN(X[[i]], ...)
9. └─foresty:::fy_design_matrix(info, nd)
10. └─stats::delete.response(stats::terms(fit))
11. └─stats (local) off(a$specials[[i]])
── Error ('test-person-time.R:7:3'): a Cox model reports the person-time behind each subgroup ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─foresty:::fy_est(foresty_interaction(fit, exposure = "no2", interaction = "sex")) at test-person-time.R:7:3
2. │ └─base::as.data.frame(x) at ./helper-fits.R:19:3
3. └─foresty::foresty_interaction(fit, exposure = "no2", interaction = "sex")
4. ├─base::do.call(...)
5. └─base::lapply(...)
6. └─foresty (local) FUN(X[[i]], ...)
7. └─foresty:::fy_exposure_estimates(...)
8. └─foresty:::fy_contrast_matrix(...)
9. └─base::lapply(...)
10. └─foresty (local) FUN(X[[i]], ...)
11. └─foresty:::fy_design_matrix(info, nd)
12. └─stats::delete.response(stats::terms(fit))
13. └─stats (local) off(a$specials[[i]])
── Error ('test-robust.R:146:3'): a fit that is already robust is reported as robust ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_false(...) at test-robust.R:146:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─broom::glance(foresty_main(list(plain), exposure = "no2"))
5. └─foresty::foresty_main(list(plain), exposure = "no2")
6. └─base::Map(...)
7. └─base::mapply(FUN = f, ..., SIMPLIFY = FALSE)
8. └─foresty (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
9. └─foresty:::fy_exposure_estimates(...)
10. └─foresty:::fy_contrast_matrix(...)
11. └─base::lapply(...)
12. └─foresty (local) FUN(X[[i]], ...)
13. └─foresty:::fy_design_matrix(info, nd)
14. └─stats::delete.response(stats::terms(fit))
15. └─stats (local) off(a$specials[[i]])
[ FAIL 3 | WARN 0 | SKIP 54 | PASS 898 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
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