CRAN Package Check Results for Package grainscape

Last updated on 2024-11-09 01:49:33 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.4.4	43.56	446.72	490.28	NOTE
r-devel-linux-x86_64-debian-gcc	0.4.4	32.93	286.82	319.75	NOTE
r-devel-linux-x86_64-fedora-clang	0.4.4			813.65	OK
r-devel-linux-x86_64-fedora-gcc	0.4.4			621.97	ERROR
r-devel-windows-x86_64	0.4.4	50.00	501.00	551.00	NOTE
r-patched-linux-x86_64	0.4.4	54.12	413.01	467.13	OK
r-release-linux-x86_64	0.4.4	49.44	412.84	462.28	OK
r-release-macos-arm64	0.4.4			195.00	OK
r-release-macos-x86_64	0.4.4			336.00	OK
r-release-windows-x86_64	0.4.4	48.00	477.00	525.00	OK
r-oldrel-macos-arm64	0.4.4			201.00	OK
r-oldrel-macos-x86_64	0.4.4			430.00	OK
r-oldrel-windows-x86_64	0.4.4	58.00	579.00	637.00	OK

Check Details

Version: 0.4.4
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: MPG.Rd: igraph, projectRaster corridor.Rd: SpatialPoints distance.Rd: SpatialPoints export.Rd: writeFormats ggGS.Rd: ggplot goc-class.Rd: igraph grainscape-deprecated.Rd: SpatialPolygonsDataFrame, SpatialPoints patchFilter.Rd: clump plot.Rd: ggplot point.Rd: SpatialPoints theme_grainscape.Rd: ggplot2, ggplot Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 0.4.4
Check: tests
Result: ERROR Running ‘test-all.R’ [25s/28s] Running the tests in ‘tests/test-all.R’ failed. Complete output: > library(testthat) > test_check("grainscape") Loading required package: grainscape *** caught segfault *** address 0x1, cause 'memory not mapped' Traceback: 1: shortest_paths(x@th[[whichThresh]]$goc, which(V(x@th[[whichThresh]]$goc)$polygonId == na.omit(startEndPolygons[1])), which(V(x@th[[whichThresh]]$goc)$polygonId == na.omit(startEndPolygons[2])), weights = V(x@th[[whichThresh]]$goc)$meanWeight) 2: .local(x, ...) 3: corridor(goc, whichThresh = 2, coordSomeNA) 4: corridor(goc, whichThresh = 2, coordSomeNA) 5: eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6: withCallingHandlers(code, warning = function(condition) { if (ignore_deprecation && is_deprecation(condition)) { return() } out$push(condition) maybe_restart("muffleWarning")}) 7: .capture(act$val <- eval_bare(quo_get_expr(.quo), quo_get_env(.quo)), ...) 8: quasi_capture(enquo(object), label, capture_warnings, ignore_deprecation = identical(regexp, NA)) 9: expect_warning(corridorSomeNA <- corridor(goc, whichThresh = 2, coordSomeNA)) 10: eval(code, test_env) 11: eval(code, test_env) 12: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error) 13: doTryCatch(return(expr), name, parentenv, handler) 14: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 15: tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) 16: doTryCatch(return(expr), name, parentenv, handler) 17: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]]) 18: tryCatchList(expr, classes, parentenv, handlers) 19: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { }) 20: test_code(desc, code, env = parent.frame(), default_reporter = local_interactive_reporter()) 21: test_that("corridor handles NA values", { cost <- .makeRaster(100, 5) mpg <- MPG(cost, cost == 1) goc <- GOC(mpg, nThresh = 5) coordNoneNA <- rbind(c(10, 10), c(90, 90)) coordSomeNA <- rbind(c(2, 2), c(90, 90)) coordAllNA <- rbind(c(2, 2), c(98, 98)) expect_warning(corridorNoneNA <- corridor(goc, whichThresh = 2, coordNoneNA), NA) expect_warning(corridorSomeNA <- corridor(goc, whichThresh = 2, coordSomeNA)) expect_error(corridorAllNA <- corridor(goc, whichThresh = 2, coordAllNA))}) 22: eval(code, test_env) 23: eval(code, test_env) 24: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error) 25: doTryCatch(return(expr), name, parentenv, handler) 26: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 27: tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) 28: doTryCatch(return(expr), name, parentenv, handler) 29: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]]) 30: tryCatchList(expr, classes, parentenv, handlers) 31: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { }) 32: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new()) 33: source_file(path, env = env(env), desc = desc, error_call = error_call) 34: FUN(X[[i]], ...) 35: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call) 36: doTryCatch(return(expr), name, parentenv, handler) 37: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 38: tryCatchList(expr, classes, parentenv, handlers) 39: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL}) 40: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)) 41: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call) 42: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel) 43: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed") 44: test_check("grainscape") An irrecoverable exception occurred. R is aborting now ... Flavor: r-devel-linux-x86_64-fedora-gcc