CRAN Package Check Results for Package hacksig

Last updated on 2025-03-25 08:58:56 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.2	3.78	57.14	60.92	ERROR
r-devel-linux-x86_64-debian-gcc	0.1.2	2.67	43.78	46.45	ERROR
r-devel-linux-x86_64-fedora-clang	0.1.2			96.80	ERROR
r-devel-linux-x86_64-fedora-gcc	0.1.2			112.02	ERROR
r-devel-macos-arm64	0.1.2			51.00	OK
r-devel-macos-x86_64	0.1.2			103.00	OK
r-devel-windows-x86_64	0.1.2	6.00	103.00	109.00	ERROR
r-patched-linux-x86_64	0.1.2	4.08	56.60	60.68	ERROR
r-release-linux-x86_64	0.1.2	3.16	53.43	56.59	ERROR
r-release-macos-arm64	0.1.2			46.00	OK
r-release-macos-x86_64	0.1.2			89.00	OK
r-release-windows-x86_64	0.1.2	6.00	84.00	90.00	ERROR
r-oldrel-macos-arm64	0.1.2				OK
r-oldrel-macos-x86_64	0.1.2			79.00	OK
r-oldrel-windows-x86_64	0.1.2	7.00	96.00	103.00	ERROR

Check Details

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘hacksig.Rmd’ using rmarkdown Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `msigdbr()`: ! Unknown subcollection. --- Backtrace: ▆ 1. ├─... %>% deframe() 2. ├─tibble::deframe(.) 3. ├─dplyr::mutate(., genes = map(genes, compose(as_vector, unname))) 4. ├─tidyr::nest(., genes = c(gene_symbol)) 5. ├─dplyr::distinct(., gs_name, gene_symbol) 6. └─msigdbr::msigdbr(species = "Homo sapiens", subcategory = "KEGG") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'hacksig.Rmd' failed with diagnostics: Unknown subcollection. --- failed re-building ‘hacksig.Rmd’ SUMMARY: processing the following file failed: ‘hacksig.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘hacksig.Rmd’ using rmarkdown Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `msigdbr()`: ! Unknown subcollection. --- Backtrace: ▆ 1. ├─... %>% deframe() 2. ├─tibble::deframe(.) 3. ├─dplyr::mutate(., genes = map(genes, compose(as_vector, unname))) 4. ├─tidyr::nest(., genes = c(gene_symbol)) 5. ├─dplyr::distinct(., gs_name, gene_symbol) 6. └─msigdbr::msigdbr(species = "Homo sapiens", subcategory = "KEGG") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'hacksig.Rmd' failed with diagnostics: Unknown subcollection. --- failed re-building ‘hacksig.Rmd’ SUMMARY: processing the following file failed: ‘hacksig.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64