CRAN Package Check Results for Package hacksig

Last updated on 2025-03-19 19:51:58 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.2	3.10	57.23	60.33	ERROR
r-devel-linux-x86_64-debian-gcc	0.1.2	2.65	44.07	46.72	ERROR
r-devel-linux-x86_64-fedora-clang	0.1.2			96.80	ERROR
r-devel-linux-x86_64-fedora-gcc	0.1.2			109.79	ERROR
r-devel-macos-arm64	0.1.2			51.00	OK
r-devel-macos-x86_64	0.1.2			103.00	OK
r-devel-windows-x86_64	0.1.2	6.00	103.00	109.00	ERROR
r-patched-linux-x86_64	0.1.2	4.26	55.80	60.06	ERROR
r-release-linux-x86_64	0.1.2	3.51	52.67	56.18	ERROR
r-release-macos-arm64	0.1.2			46.00	OK
r-release-macos-x86_64	0.1.2			89.00	OK
r-release-windows-x86_64	0.1.2	8.00	82.00	90.00	ERROR
r-oldrel-macos-arm64	0.1.2				OK
r-oldrel-macos-x86_64	0.1.2			79.00	OK
r-oldrel-windows-x86_64	0.1.2	6.00	95.00	101.00	ERROR

Check Details

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘hacksig.Rmd’ using rmarkdown Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `msigdbr()`: ! Unknown subcollection. --- Backtrace: ▆ 1. ├─... %>% deframe() 2. ├─tibble::deframe(.) 3. ├─dplyr::mutate(., genes = map(genes, compose(as_vector, unname))) 4. ├─tidyr::nest(., genes = c(gene_symbol)) 5. ├─dplyr::distinct(., gs_name, gene_symbol) 6. └─msigdbr::msigdbr(species = "Homo sapiens", subcategory = "KEGG") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'hacksig.Rmd' failed with diagnostics: Unknown subcollection. --- failed re-building ‘hacksig.Rmd’ SUMMARY: processing the following file failed: ‘hacksig.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘hacksig.Rmd’ using rmarkdown Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `msigdbr()`: ! Unknown subcollection. --- Backtrace: ▆ 1. ├─... %>% deframe() 2. ├─tibble::deframe(.) 3. ├─dplyr::mutate(., genes = map(genes, compose(as_vector, unname))) 4. ├─tidyr::nest(., genes = c(gene_symbol)) 5. ├─dplyr::distinct(., gs_name, gene_symbol) 6. └─msigdbr::msigdbr(species = "Homo sapiens", subcategory = "KEGG") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'hacksig.Rmd' failed with diagnostics: Unknown subcollection. --- failed re-building ‘hacksig.Rmd’ SUMMARY: processing the following file failed: ‘hacksig.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘hacksig.Rmd’ using rmarkdown Quitting from lines 216-225 [unnamed-chunk-19] (hacksig.Rmd) Error: processing vignette 'hacksig.Rmd' failed with diagnostics: Unknown subcollection. --- failed re-building ‘hacksig.Rmd’ SUMMARY: processing the following file failed: ‘hacksig.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64