CRAN Package Check Results for Package harmony

Last updated on 2026-06-06 05:52:58 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	2.0.4	72.53	197.19	269.72	OK
r-devel-linux-x86_64-debian-gcc	2.0.4	52.28	141.26	193.54	OK
r-devel-linux-x86_64-fedora-clang	2.0.3	102.00	336.49	438.49	ERROR
r-devel-linux-x86_64-fedora-gcc	2.0.4	153.00	334.31	487.31	OK
r-devel-windows-x86_64	2.0.4	98.00	226.00	324.00	OK
r-patched-linux-x86_64	2.0.3	70.05	191.44	261.49	OK
r-release-linux-x86_64	2.0.3	70.07	190.18	260.25	OK
r-release-macos-arm64	2.0.4	16.00	62.00	78.00	OK
r-release-macos-x86_64	2.0.4	45.00	209.00	254.00	OK
r-release-windows-x86_64	2.0.4	95.00	237.00	332.00	OK
r-oldrel-macos-arm64	2.0.4	13.00	64.00	77.00	OK
r-oldrel-macos-x86_64	2.0.4	44.00	193.00	237.00	OK
r-oldrel-windows-x86_64	2.0.4	108.00	302.00	410.00	OK

Check Details

Version: 2.0.3
Check: tests
Result: ERROR Running ‘testthat.R’ [8s/32s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(harmony) Loading required package: Rcpp • This is Harmony2 version 2.0.3 • Read the guide: run vignette() • Get help: Visit the website at https://korsunskylab.github.io/harmony2/ and report issues on https://github.com/immunogenomics/harmony/issues > > test_check("harmony") 119exists, retrying for cluster 32 3.2314 120exists, retrying for cluster 42 3.22857 169exists, retrying for cluster 45 1.83073 504exists, retrying for cluster 15 3.27917 Saving _problems/test_two_variable-11.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_two_variable.R:5:1'): (code run outside of `test_that()`) ────── <std::logic_error/C++Error/error/condition> Error: inv(): use of LAPACK must be enabled Backtrace: ▆ 1. ├─harmony::RunHarmony(...) at test_two_variable.R:5:1 2. └─harmony:::RunHarmony.default(...) 3. ├─base::tryCatch(...) 4. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 5. └─harmony:::harmonize(harmonyObj, max.iter.harmony, verbose) 6. └─harmonyObj$moe_correct_ridge_cpp() [ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang