CRAN Package Check Results for Maintainer ‘Erika S. Helgeson <helge at umn.edu>’

Last updated on 2024-11-24 15:49:50 CET.

Package	NOTE	OK
SCBiclust	10	3
UNPaC	10	3

Package SCBiclust

Current CRAN status: NOTE: 10, OK: 3

Version: 1.0.1
Check: Rd files
Result: NOTE checkRd: (-1) PermBiclust.beta.ks.Rd:29: Lost braces; missing escapes or markup? 29 | \item{\code{num.bicluster}}: {The number of biclusters estimated by the procedure.} | ^ checkRd: (-1) PermBiclust.beta.ks.Rd:30: Lost braces 30 | \item{\code{x.residual}}: {The data matrix \code{x} after removing the signals} | ^ checkRd: (-1) PermBiclust.sigclust.Rd:32: Lost braces; missing escapes or markup? 32 | \item{\code{num.bicluster}}: {The number of biclusters estimated by the procedure.} | ^ checkRd: (-1) PermBiclust.sigclust.Rd:33: Lost braces 33 | \item{\code{x.residual}}: {The data matrix \code{x} after removing the signals} | ^ checkRd: (-1) PermBiclust.sigclust_stop.Rd:35: Lost braces; missing escapes or markup? 35 | \item{\code{num.bicluster}}: {The number of biclusters estimated by the procedure.} | ^ checkRd: (-1) PermBiclust.sigclust_stop.Rd:36: Lost braces 36 | \item{\code{x.residual}}: {The data matrix \code{x} after removing the signals} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 1.0.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: PermBiclust.beta.ks.Rd: KMeansSparseCluster PermBiclust.sigclust.Rd: sigclust, KMeansSparseCluster PermBiclust.sigclust_stop.Rd: sigclust, KMeansSparseCluster PermHclust.sigclust.Rd: HierarchicalSparseCluster, sigclust Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package UNPaC

Current CRAN status: NOTE: 10, OK: 3

Version: 1.1.1
Check: Rd files
Result: NOTE checkRd: (-1) UNPaC_Copula.Rd:59: Lost braces; missing escapes or markup? 59 | \item{\code{selected_features}}: {A vector of integers indicating the features retained by the feature filtering process.} | ^ checkRd: (-1) UNPaC_Copula.Rd:60: Lost braces; missing escapes or markup? 60 | \item{\code{sim_CI}}: {vector containing the cluster indices for each generated unimodal reference distribution} | ^ checkRd: (-1) UNPaC_Copula.Rd:61-62: Lost braces 61 | \item{\code{pvalue_emp}}: {the empirical p-value: the proportion of times the cluster index from the reference | ^ checkRd: (-1) UNPaC_Copula.Rd:63: Lost braces; missing escapes or markup? 63 | \item{\code{pvalue_norm}}: {the normalized p-value: the simulated p-value based on comparison to a standard normal distribution } | ^ checkRd: (-1) UNPaC_num_clust.Rd:58-62: Lost braces 58 | \item{\code{BestK}}: {A matrix with 1 row and 4 columns named: "Max_CI","Max_CI_wi_1SE","Max_scaled_CI" and "Max_logWCSS_wi_1SE". | ^ checkRd: (-1) UNPaC_num_clust.Rd:63-65: Lost braces 63 | \item{\code{full_process}}: {A matrix containing the number of clusters, K, evaluated, the CI from the data, the average CI from the null | ^ checkRd: (-1) UNPaC_num_clust.Rd:66: Lost braces; missing escapes or markup? 66 | \item{\code{selected_features}}: {A vector of integers indicating the features retained by the feature filtering process.}} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64