Last updated on 2025-01-23 03:50:36 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 3.33 | 37.51 | 40.84 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 2.07 | 28.81 | 30.88 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 69.03 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 77.79 | OK | |||
| r-devel-windows-x86_64 | 1.1.4 | 4.00 | 149.00 | 153.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1.4 | 3.70 | 34.98 | 38.68 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 3.00 | 36.25 | 39.25 | OK | |
| r-release-macos-arm64 | 1.1.4 | 46.00 | OK | |||
| r-release-macos-x86_64 | 1.1.4 | 104.00 | OK | |||
| r-release-windows-x86_64 | 1.1.4 | 4.00 | 148.00 | 152.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.1.4 | 46.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1.4 | 57.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.4 | 6.00 | 191.00 | 197.00 | ERROR |
Version: 1.1.4
Check: tests
Result: ERROR
Running 'testthat.R' [83s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(jlmerclusterperm)
>
> test_check("jlmerclusterperm")
Julia Version 1.8.5
Commit 17cfb8e65e (2023-01-08 06:45 UTC)
Platform Info:
OS: Windows (x86_64-w64-mingw32)
CPU: 48 × AMD EPYC 7443 24-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-13.0.1 (ORCJIT, znver3)
Threads: 1 on 96 virtual cores
nothing
ℹ Starting Julia with 2 threads
✔ Starting Julia with 2 threads [5.3s]
ℹ Activating package environment
Precompiling project...
✗ GLM
✗ MixedModels
✗ JlmerClusterPerm
0 dependencies successfully precompiled in 30 seconds. 105 already precompiled.
4 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages
✔ Activating package environment [35.2s]
Status `D:\temp\2025_01_22_01_50_00_23758\RtmpOwgyhK\julia\Project.toml`
⌅ [a93c6f00] DataFrames v1.3.6
[31c24e10] Distributions v0.25.117
⌅ [38e38edf] GLM v1.8.3
[2a59065a] JlmerClusterPerm v0.1.1 `JlmerClusterPerm`
[ff71e718] MixedModels v4.28.0
⌅ [92933f4c] ProgressMeter v1.7.2
⌅ [74087812] Random123 v1.6.2
⌃ [2913bbd2] StatsBase v0.33.21
[3eaba693] StatsModels v0.7.4
[fd094767] Suppressor v0.2.8
[9a3f8284] Random
Info Packages marked with ⌃ and ⌅ have new versions available, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated`
# This file is machine-generated - editing it directly is not advised
julia_version = "1.8.5"
manifest_format = "2.0"
project_hash = "b0139eba902ff9867040133671a74aadd06234b1"
[[deps.Adapt]]
deps = ["LinearAlgebra", "Requires"]
git-tree-sha1 = "50c3c56a52972d78e8be9fd135bfb91c9574c140"
uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
version = "4.1.1"
[[deps.AliasTables]]
deps = ["PtrArrays", "Random"]
git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff"
uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8"
version = "1.1.3"
[[deps.ArgTools]]
uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
version = "1.1.1"
[[deps.ArrayLayouts]]
deps = ["FillArrays", "LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "492681bc44fac86804706ddb37da10880a2bd528"
uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
version = "1.10.4"
[[deps.Arrow]]
deps = ["ArrowTypes", "BitIntegers", "CodecLz4", "CodecZstd", "ConcurrentUtilities", "DataAPI", "Dates", "EnumX", "Mmap", "PooledArrays", "SentinelArrays", "Tables", "TimeZones", "TranscodingStreams", "UUIDs"]
git-tree-sha1 = "a3ae633a80f26751041e8c17c091c9e910d5537d"
uuid = "69666777-d1a9-59fb-9406-91d4454c9d45"
version = "2.7.4"
[[deps.ArrowTypes]]
deps = ["Sockets", "UUIDs"]
git-tree-sha1 = "404265cd8128a2515a81d5eae16de90fdef05101"
uuid = "31f734f8-188a-4ce0-8406-c8a06bd891cd"
version = "2.3.0"
[[deps.Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
[[deps.BSplineKit]]
deps = ["ArrayLayouts", "BandedMatrices", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra", "PrecompileTools", "Random", "Reexport", "SparseArrays", "Static", "StaticArrays", "StaticArraysCore"]
git-tree-sha1 = "15ab25b14c48783b1b73f80b14883fce7050daea"
uuid = "093aae92-e908-43d7-9660-e50ee39d5a0a"
version = "0.17.7"
[[deps.BandedMatrices]]
deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools", "SparseArrays"]
git-tree-sha1 = "3023a8cada3b08233252ee9b04edc3f3c39b1f04"
uuid = "aae01518-5342-5314-be14-df237901396f"
version = "1.7.6"
[[deps.Base64]]
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
[[deps.BenchmarkTools]]
deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"]
git-tree-sha1 = "e38fbc49a620f5d0b660d7f543db1009fe0f8336"
uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
version = "1.6.0"
[[deps.BitIntegers]]
deps = ["Random"]
git-tree-sha1 = "6158239ac409f960abbc232a9b24c00f5cce3108"
uuid = "c3b6d118-76ef-56ca-8cc7-ebb389d030a1"
version = "0.3.2"
[[deps.Bzip2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1"
uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0"
version = "1.0.8+4"
[[deps.CEnum]]
git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc"
uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82"
version = "0.5.0"
[[deps.ChainRulesCore]]
deps = ["Compat", "LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "1713c74e00545bfe14605d2a2be1712de8fbcb58"
uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
version = "1.25.1"
[[deps.ChangesOfVariables]]
deps = ["InverseFunctions", "LinearAlgebra", "Test"]
git-tree-sha1 = "799b25ca3a8a24936ae7b5c52ad194685fc3e6ef"
uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0"
version = "0.1.9"
[[deps.CodecBzip2]]
deps = ["Bzip2_jll", "TranscodingStreams"]
git-tree-sha1 = "84990fa864b7f2b4901901ca12736e45ee79068c"
uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd"
version = "0.8.5"
[[deps.CodecLz4]]
deps = ["Lz4_jll", "TranscodingStreams"]
git-tree-sha1 = "0db0c70ca94c0a79cadad269497f25ca88b9fa91"
uuid = "5ba52731-8f18-5e0d-9241-30f10d1ec561"
version = "0.4.5"
[[deps.CodecZlib]]
deps = ["TranscodingStreams", "Zlib_jll"]
git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759"
uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
version = "0.7.6"
[[deps.CodecZstd]]
deps = ["TranscodingStreams", "Zstd_jll"]
git-tree-sha1 = "d0073f473757f0d39ac9707f1eb03b431573cbd8"
uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2"
version = "0.8.6"
[[deps.CommonSubexpressions]]
deps = ["MacroTools"]
git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5"
uuid = "bbf7d656-a473-5ed7-a52c-81e309532950"
version = "0.3.1"
[[deps.Compat]]
deps = ["Dates", "LinearAlgebra", "TOML", "UUIDs"]
git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
version = "4.16.0"
[[deps.CompilerSupportLibraries_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
version = "1.0.1+0"
[[deps.ConcurrentUtilities]]
deps = ["Serialization", "Sockets"]
git-tree-sha1 = "f36e5e8fdffcb5646ea5da81495a5a7566005127"
uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
version = "2.4.3"
[[deps.Crayons]]
git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15"
uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
version = "4.1.1"
[[deps.DataAPI]]
git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe"
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
version = "1.16.0"
[[deps.DataFrames]]
deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
git-tree-sha1 = "db2a9cb664fcea7836da4b414c3278d71dd602d2"
uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
version = "1.3.6"
[[deps.DataStructures]]
deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82"
uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
version = "0.18.20"
[[deps.DataValueInterfaces]]
git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464"
version = "1.0.0"
[[deps.Dates]]
deps = ["Printf"]
uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
[[deps.DensityInterface]]
deps = ["InverseFunctions", "Test"]
git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b"
uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d"
version = "0.4.0"
[[deps.Dictionaries]]
deps = ["Indexing", "Random", "Serialization"]
git-tree-sha1 = "61ab242274c0d44412d8eab38942a49aa46de9d0"
uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4"
version = "0.4.3"
[[deps.DiffResults]]
deps = ["StaticArraysCore"]
git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621"
uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5"
version = "1.1.0"
[[deps.DiffRules]]
deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"]
git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272"
uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
version = "1.15.1"
[[deps.Distributed]]
deps = ["Random", "Serialization", "Sockets"]
uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
[[deps.Distributions]]
deps = ["AliasTables", "ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
git-tree-sha1 = "03aa5d44647eaec98e1920635cdfed5d5560a8b9"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
version = "0.25.117"
[[deps.DocStringExtensions]]
deps = ["LibGit2"]
git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d"
uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
version = "0.9.3"
[[deps.Downloads]]
deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
version = "1.6.0"
[[deps.EnumX]]
git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237"
uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56"
version = "1.0.4"
[[deps.ExprTools]]
git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec"
uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04"
version = "0.1.10"
[[deps.FastGaussQuadrature]]
deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"]
git-tree-sha1 = "fd923962364b645f3719855c88f7074413a6ad92"
uuid = "442a2c76-b920-505d-bb47-c5924d526838"
version = "1.0.2"
[[deps.FileWatching]]
uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
[[deps.FillArrays]]
deps = ["LinearAlgebra", "PDMats", "SparseArrays", "Statistics"]
git-tree-sha1 = "6a70198746448456524cb442b8af316927ff3e1a"
uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
version = "1.13.0"
[[deps.Formatting]]
deps = ["Logging", "Printf"]
git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87"
uuid = "59287772-0a20-5a39-b81b-1366585eb4c0"
version = "0.4.3"
[[deps.ForwardDiff]]
deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"]
git-tree-sha1 = "a2df1b776752e3f344e5116c06d75a10436ab853"
uuid = "f6369f11-7733-5829-9624-2563aa707210"
version = "0.10.38"
[[deps.Future]]
deps = ["Random"]
uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
[[deps.GLM]]
deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"]
git-tree-sha1 = "97829cfda0df99ddaeaafb5b370d6cab87b7013e"
uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a"
version = "1.8.3"
[[deps.HypergeometricFunctions]]
deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"]
git-tree-sha1 = "b1c2585431c382e3fe5805874bda6aea90a95de9"
uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
version = "0.3.25"
[[deps.IfElse]]
git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1"
uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173"
version = "0.1.1"
[[deps.Indexing]]
git-tree-sha1 = "ce1566720fd6b19ff3411404d4b977acd4814f9f"
uuid = "313cdc1a-70c2-5d6a-ae34-0150d3930a38"
version = "1.1.1"
[[deps.InlineStrings]]
deps = ["Parsers"]
git-tree-sha1 = "45521d31238e87ee9f9732561bfee12d4eebd52d"
uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48"
version = "1.4.2"
[[deps.InteractiveUtils]]
deps = ["Markdown"]
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
[[deps.InverseFunctions]]
deps = ["Dates", "Test"]
git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb"
uuid = "3587e190-3f89-42d0-90ee-14403ec27112"
version = "0.1.17"
[[deps.InvertedIndices]]
git-tree-sha1 = "6da3c4316095de0f5ee2ebd875df8721e7e0bdbe"
uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f"
version = "1.3.1"
[[deps.IrrationalConstants]]
git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2"
uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
version = "0.2.2"
[[deps.IteratorInterfaceExtensions]]
git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
uuid = "82899510-4779-5014-852e-03e436cf321d"
version = "1.0.0"
[[deps.JLLWrappers]]
deps = ["Artifacts", "Preferences"]
git-tree-sha1 = "a007feb38b422fbdab534406aeca1b86823cb4d6"
uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
version = "1.7.0"
[[deps.JSON]]
deps = ["Dates", "Mmap", "Parsers", "Unicode"]
git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a"
uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
version = "0.21.4"
[[deps.JSON3]]
deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"]
git-tree-sha1 = "1d322381ef7b087548321d3f878cb4c9bd8f8f9b"
uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1"
version = "1.14.1"
[[deps.JlmerClusterPerm]]
deps = ["DataFrames", "Distributions", "GLM", "MixedModels", "ProgressMeter", "Random", "Random123", "StatsBase", "StatsModels", "Suppressor"]
path = "JlmerClusterPerm"
uuid = "2a59065a-9564-4903-82dd-0e42ce19d0e1"
version = "0.1.1"
[[deps.LazyArtifacts]]
deps = ["Artifacts", "Pkg"]
uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3"
[[deps.LibCURL]]
deps = ["LibCURL_jll", "MozillaCACerts_jll"]
uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
version = "0.6.3"
[[deps.LibCURL_jll]]
deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
version = "7.84.0+0"
[[deps.LibGit2]]
deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
[[deps.LibSSH2_jll]]
deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
version = "1.10.2+0"
[[deps.Libdl]]
uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
[[deps.LinearAlgebra]]
deps = ["Libdl", "libblastrampoline_jll"]
uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
[[deps.LogExpFunctions]]
deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"]
git-tree-sha1 = "a2d09619db4e765091ee5c6ffe8872849de0feea"
uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
version = "0.3.28"
[[deps.Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
[[deps.Lz4_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "191686b1ac1ea9c89fc52e996ad15d1d241d1e33"
uuid = "5ced341a-0733-55b8-9ab6-a4889d929147"
version = "1.10.1+0"
[[deps.MacroTools]]
git-tree-sha1 = "72aebe0b5051e5143a079a4685a46da330a40472"
uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
version = "0.5.15"
[[deps.Markdown]]
deps = ["Base64"]
uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
[[deps.MathOptInterface]]
deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON3", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"]
git-tree-sha1 = "f346e3b50c8bb62b7a5c4961ebdbaef65d1ce1e2"
uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
version = "1.35.1"
[[deps.MbedTLS_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
version = "2.28.0+0"
[[deps.Missings]]
deps = ["DataAPI"]
git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d"
uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
version = "1.2.0"
[[deps.MixedModels]]
deps = ["Arrow", "BSplineKit", "Compat", "DataAPI", "Distributions", "GLM", "JSON3", "LinearAlgebra", "Markdown", "MixedModelsDatasets", "NLopt", "PooledArrays", "PrecompileTools", "ProgressMeter", "Random", "SparseArrays", "StaticArrays", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels", "StructTypes", "Tables", "TypedTables"]
git-tree-sha1 = "5af40242899244ee1a73f48b640425ca93d3ad4f"
uuid = "ff71e718-51f3-5ec2-a782-8ffcbfa3c316"
version = "4.28.0"
[[deps.MixedModelsDatasets]]
deps = ["Arrow", "Artifacts", "LazyArtifacts"]
git-tree-sha1 = "5f508af97ecf39645febed8ba2fabf5cfdc682e0"
uuid = "7e9fb7ac-9f67-43bf-b2c8-96ba0796cbb6"
version = "0.1.1"
[[deps.Mmap]]
uuid = "a63ad114-7e13-5084-954f-fe012c677804"
[[deps.Mocking]]
deps = ["Compat", "ExprTools"]
git-tree-sha1 = "2c140d60d7cb82badf06d8783800d0bcd1a7daa2"
uuid = "78c3b35d-d492-501b-9361-3d52fe80e533"
version = "0.8.1"
[[deps.MozillaCACerts_jll]]
uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
version = "2022.2.1"
[[deps.MutableArithmetics]]
deps = ["LinearAlgebra", "SparseArrays", "Test"]
git-tree-sha1 = "43122df26d27424b23577d59e2d8020f28386516"
uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
version = "1.6.2"
[[deps.NLopt]]
deps = ["CEnum", "MathOptInterface", "NLopt_jll"]
git-tree-sha1 = "dd79cb2a2d779209e42d76795edfde1c778eb5e0"
uuid = "76087f3c-5699-56af-9a33-bf431cd00edd"
version = "1.1.2"
[[deps.NLopt_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "dd645a206cc1e8bc4ff0dcfe3da08e39b60dd662"
uuid = "079eb43e-fd8e-5478-9966-2cf3e3edb778"
version = "2.9.0+0"
[[deps.NaNMath]]
deps = ["OpenLibm_jll"]
git-tree-sha1 = "030ea22804ef91648f29b7ad3fc15fa49d0e6e71"
uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
version = "1.0.3"
[[deps.NetworkOptions]]
uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
version = "1.2.0"
[[deps.OpenBLAS_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
version = "0.3.20+0"
[[deps.OpenLibm_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "05823500-19ac-5b8b-9628-191a04bc5112"
version = "0.8.1+0"
[[deps.OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"]
git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335"
uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
version = "0.5.6+0"
[[deps.OrderedCollections]]
git-tree-sha1 = "12f1439c4f986bb868acda6ea33ebc78e19b95ad"
uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
version = "1.7.0"
[[deps.PDMats]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65"
uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
version = "0.11.31"
[[deps.Parsers]]
deps = ["Dates", "PrecompileTools", "UUIDs"]
git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821"
uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
version = "2.8.1"
[[deps.Pkg]]
deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
version = "1.8.0"
[[deps.PooledArrays]]
deps = ["DataAPI", "Future"]
git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3"
uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720"
version = "1.4.3"
[[deps.PrecompileTools]]
deps = ["Preferences"]
git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f"
uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a"
version = "1.2.1"
[[deps.Preferences]]
deps = ["TOML"]
git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6"
uuid = "21216c6a-2e73-6563-6e65-726566657250"
version = "1.4.3"
[[deps.PrettyTables]]
deps = ["Crayons", "Formatting", "Markdown", "Reexport", "Tables"]
git-tree-sha1 = "dfb54c4e414caa595a1f2ed759b160f5a3ddcba5"
uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
version = "1.3.1"
[[deps.Printf]]
deps = ["Unicode"]
uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
[[deps.Profile]]
deps = ["Printf"]
uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79"
[[deps.ProgressMeter]]
deps = ["Distributed", "Printf"]
git-tree-sha1 = "d7a7aef8f8f2d537104f170139553b14dfe39fe9"
uuid = "92933f4c-e287-5a05-a399-4b506db050ca"
version = "1.7.2"
[[deps.PtrArrays]]
git-tree-sha1 = "1d36ef11a9aaf1e8b74dacc6a731dd1de8fd493d"
uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d"
version = "1.3.0"
[[deps.QuadGK]]
deps = ["DataStructures", "LinearAlgebra"]
git-tree-sha1 = "cda3b045cf9ef07a08ad46731f5a3165e56cf3da"
uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
version = "2.11.1"
[[deps.REPL]]
deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
[[deps.Random]]
deps = ["SHA", "Serialization"]
uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
[[deps.Random123]]
deps = ["Random", "RandomNumbers"]
git-tree-sha1 = "c860e84651f58ce240dd79e5d9e055d55234c35a"
uuid = "74087812-796a-5b5d-8853-05524746bad3"
version = "1.6.2"
[[deps.RandomNumbers]]
deps = ["Random"]
git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902"
uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143"
version = "1.6.0"
[[deps.RecipesBase]]
deps = ["PrecompileTools"]
git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff"
uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
version = "1.3.4"
[[deps.Reexport]]
git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
uuid = "189a3867-3050-52da-a836-e630ba90ab69"
version = "1.2.2"
[[deps.Requires]]
deps = ["UUIDs"]
git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7"
uuid = "ae029012-a4dd-5104-9daa-d747884805df"
version = "1.3.0"
[[deps.Rmath]]
deps = ["Random", "Rmath_jll"]
git-tree-sha1 = "852bd0f55565a9e973fcfee83a84413270224dc4"
uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa"
version = "0.8.0"
[[deps.Rmath_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8"
uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
version = "0.5.1+0"
[[deps.SHA]]
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
version = "0.7.0"
[[deps.Scratch]]
deps = ["Dates"]
git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386"
uuid = "6c6a2e73-6563-6170-7368-637461726353"
version = "1.2.1"
[[deps.SentinelArrays]]
deps = ["Dates", "Random"]
git-tree-sha1 = "712fb0231ee6f9120e005ccd56297abbc053e7e0"
uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c"
version = "1.4.8"
[[deps.Serialization]]
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
[[deps.ShiftedArrays]]
git-tree-sha1 = "503688b59397b3307443af35cd953a13e8005c16"
uuid = "1277b4bf-5013-50f5-be3d-901d8477a67a"
version = "2.0.0"
[[deps.Sockets]]
uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
[[deps.SortingAlgorithms]]
deps = ["DataStructures"]
git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085"
uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
version = "1.2.1"
[[deps.SparseArrays]]
deps = ["LinearAlgebra", "Random"]
uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
[[deps.SpecialFunctions]]
deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
git-tree-sha1 = "64cca0c26b4f31ba18f13f6c12af7c85f478cfde"
uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
version = "2.5.0"
[[deps.SplitApplyCombine]]
deps = ["Dictionaries", "Indexing"]
git-tree-sha1 = "c06d695d51cfb2187e6848e98d6252df9101c588"
uuid = "03a91e81-4c3e-53e1-a0a4-9c0c8f19dd66"
version = "1.2.3"
[[deps.Static]]
deps = ["IfElse"]
git-tree-sha1 = "b366eb1eb68075745777d80861c6706c33f588ae"
uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
version = "0.8.9"
[[deps.StaticArrays]]
deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore", "Statistics"]
git-tree-sha1 = "47091a0340a675c738b1304b58161f3b0839d454"
uuid = "90137ffa-7385-5640-81b9-e52037218182"
version = "1.9.10"
[[deps.StaticArraysCore]]
git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682"
uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
version = "1.4.3"
[[deps.Statistics]]
deps = ["LinearAlgebra", "SparseArrays"]
uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
[[deps.StatsAPI]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed"
uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
version = "1.7.0"
[[deps.StatsBase]]
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916"
uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
version = "0.33.21"
[[deps.StatsFuns]]
deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
git-tree-sha1 = "b423576adc27097764a90e163157bcfc9acf0f46"
uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
version = "1.3.2"
[[deps.StatsModels]]
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"]
git-tree-sha1 = "9022bcaa2fc1d484f1326eaa4db8db543ca8c66d"
uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d"
version = "0.7.4"
[[deps.StructTypes]]
deps = ["Dates", "UUIDs"]
git-tree-sha1 = "159331b30e94d7b11379037feeb9b690950cace8"
uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4"
version = "1.11.0"
[[deps.SuiteSparse]]
deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
[[deps.Suppressor]]
deps = ["Logging"]
git-tree-sha1 = "6dbb5b635c5437c68c28c2ac9e39b87138f37c0a"
uuid = "fd094767-a336-5f1f-9728-57cf17d0bbfb"
version = "0.2.8"
[[deps.TOML]]
deps = ["Dates"]
uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
version = "1.0.0"
[[deps.TZJData]]
deps = ["Artifacts"]
git-tree-sha1 = "006a327222dda856e2304959e566ff0104ac8594"
uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7"
version = "1.3.1+2024b"
[[deps.TableTraits]]
deps = ["IteratorInterfaceExtensions"]
git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39"
uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
version = "1.0.1"
[[deps.Tables]]
deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"]
git-tree-sha1 = "598cd7c1f68d1e205689b1c2fe65a9f85846f297"
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
version = "1.12.0"
[[deps.Tar]]
deps = ["ArgTools", "SHA"]
uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
version = "1.10.1"
[[deps.Test]]
deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
[[deps.TimeZones]]
deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "RecipesBase", "Scratch", "TZJData", "Unicode", "p7zip_jll"]
git-tree-sha1 = "fcbcffdc11524d08523e92ae52214b29d90b50bb"
uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53"
version = "1.20.0"
[[deps.TranscodingStreams]]
git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742"
uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
version = "0.11.3"
[[deps.TypedTables]]
deps = ["Adapt", "Dictionaries", "Indexing", "SplitApplyCombine", "Tables", "Unicode"]
git-tree-sha1 = "84fd7dadde577e01eb4323b7e7b9cb51c62c60d4"
uuid = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9"
version = "1.4.6"
[[deps.UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
[[deps.Unicode]]
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
[[deps.Zlib_jll]]
deps = ["Libdl"]
uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
version = "1.2.12+3"
[[deps.Zstd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "622cf78670d067c738667aaa96c553430b65e269"
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.5.7+0"
[[deps.libblastrampoline_jll]]
deps = ["Artifacts", "Libdl", "OpenBLAS_jll"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.1.1+0"
[[deps.nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
version = "1.48.0+0"
[[deps.p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
version = "17.4.0+0"
i Starting Julia with 2 threads
v Starting Julia with 2 threads [5s]
i Activating package environment
v Activating package environment [6.1s]
i Running package setup scripts (1/11)
i Running package setup scripts (5/11)
x Failed to compile jlmerclusterperm. Please submit an issue to <https://github.com/yjunechoe/jlmerclusterperm/issues>.
i Running package setup scripts (5/11)
x Running package setup scripts (6/11) [2.3s]
Starting Julia ...
✖ Failed to compile jlmerclusterperm. Please submit an issue to <https://github.com/yjunechoe/jlmerclusterperm/issues>.
[ FAIL 4 | WARN 0 | SKIP 7 | PASS 5 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
• On CRAN (7): 'test-jlmer.R:1:1', 'test-julia_rng.R:1:1',
'test-permute.R:1:1', 'test-progress.R:1:1', 'test-singularity.R:1:1',
'test-threshold_search.R:1:1', 'test-timewise_statistics.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-aaa-b-setup.R:7:3'): Setup with seed works (use 2 for testing) ──
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: ArgumentError: Package Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] is required but does not seem to be installed:
- Run `Pkg.instantiate()` to install all recorded dependencies.
Stacktrace:
[1] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1306
[2] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[3] macro expansion
@ .\loading.jl:1180 [inlined]
[4] macro expansion
@ .\lock.jl:223 [inlined]
[5] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[6] eval
@ .\boot.jl:368 [inlined]
[7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[8] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[9] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:150
[10] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[11] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[12] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:67
[13] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:55
[14] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\communicating.jl:185
[15] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_true(...) at test-aaa-b-setup.R:7:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::jlmerclusterperm_setup(...)
5. └─jlmerclusterperm:::setup_with_progress(...)
6. ├─base::withCallingHandlers(...)
7. └─jlmerclusterperm:::source_jl(verbose = verbose)
8. └─JuliaConnectoR::juliaEval(jl_pkgs[i])
9. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
10. ├─base::tryCatch(...)
11. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
12. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
13. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
14. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
15. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Failure ('test-aaa-b-setup.R:13:3'): RNG initializes to seed=1 counter=0 ────
get_rng_seed() (`actual`) not equal to 1 (`expected`).
`actual` is NULL
`expected` is a double vector (1)
── Error ('test-aaa-b-setup.R:14:3'): RNG initializes to seed=1 counter=0 ──────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: UndefVarError: rng not defined
Stacktrace:
[1] top-level scope
@ string:1
[2] eval
@ .\boot.jl:368 [inlined]
[3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[4] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[5] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:150
[6] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[7] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[8] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:67
[9] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:55
[10] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\communicating.jl:185
[11] serve(port_hint::Int64; multiclient::Bool, portfile::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\communicating.jl:152
[12] top-level scope
@ D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\main.jl:23
[13] include(mod::Module, _path::String)
@ Base .\Base.jl:419
[14] exec_options(opts::Base.JLOptions)
@ Base .\client.jl:303
[15] _start()
@ Base .\client.jl:522
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_equal(get_rng_state(), 0) at test-aaa-b-setup.R:14:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::get_rng_state()
5. └─JuliaConnectoR::juliaEval("Int(rng.ctr1)")
6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
7. ├─base::tryCatch(...)
8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
12. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Error ('test-clusterpermute.R:3:1'): (code run outside of `test_that()`) ────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: ArgumentError: Package Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] is required but does not seem to be installed:
- Run `Pkg.instantiate()` to install all recorded dependencies.
Stacktrace:
[1] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1306
[2] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[3] macro expansion
@ .\loading.jl:1180 [inlined]
[4] macro expansion
@ .\lock.jl:223 [inlined]
[5] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[6] eval
@ .\boot.jl:368 [inlined]
[7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[8] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[9] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:150
[10] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[11] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[12] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:67
[13] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:55
[14] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\communicating.jl:185
[15] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:1
Backtrace:
▆
1. └─jlmerclusterperm::jlmerclusterperm_setup(...) at test-clusterpermute.R:3:1
2. └─jlmerclusterperm:::setup_with_progress(...)
3. ├─base::withCallingHandlers(...)
4. └─jlmerclusterperm:::source_jl(verbose = verbose)
5. └─JuliaConnectoR::juliaEval(jl_pkgs[i])
6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
7. ├─base::tryCatch(...)
8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
12. └─JuliaConnectoR:::handleCallbacksAndOutput()
[ FAIL 4 | WARN 0 | SKIP 7 | PASS 5 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running 'testthat.R' [82s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(jlmerclusterperm)
>
> test_check("jlmerclusterperm")
Julia Version 1.8.5
Commit 17cfb8e65e (2023-01-08 06:45 UTC)
Platform Info:
OS: Windows (x86_64-w64-mingw32)
CPU: 48 × AMD EPYC 7443 24-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-13.0.1 (ORCJIT, znver3)
Threads: 1 on 96 virtual cores
nothing
ℹ Starting Julia with 2 threads
✔ Starting Julia with 2 threads [5s]
ℹ Activating package environment
Precompiling project...
✗ GLM
✗ MixedModels
✗ JlmerClusterPerm
0 dependencies successfully precompiled in 30 seconds. 105 already precompiled.
4 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages
✔ Activating package environment [35.6s]
Status `D:\temp\2025_01_21_01_50_00_3756\Rtmp2BaMp6\julia\Project.toml`
⌅ [a93c6f00] DataFrames v1.3.6
[31c24e10] Distributions v0.25.117
⌅ [38e38edf] GLM v1.8.3
[2a59065a] JlmerClusterPerm v0.1.1 `JlmerClusterPerm`
[ff71e718] MixedModels v4.28.0
⌅ [92933f4c] ProgressMeter v1.7.2
⌅ [74087812] Random123 v1.6.2
⌃ [2913bbd2] StatsBase v0.33.21
[3eaba693] StatsModels v0.7.4
[fd094767] Suppressor v0.2.8
[9a3f8284] Random
Info Packages marked with ⌃ and ⌅ have new versions available, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated`
# This file is machine-generated - editing it directly is not advised
julia_version = "1.8.5"
manifest_format = "2.0"
project_hash = "b0139eba902ff9867040133671a74aadd06234b1"
[[deps.Adapt]]
deps = ["LinearAlgebra", "Requires"]
git-tree-sha1 = "50c3c56a52972d78e8be9fd135bfb91c9574c140"
uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
version = "4.1.1"
[[deps.AliasTables]]
deps = ["PtrArrays", "Random"]
git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff"
uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8"
version = "1.1.3"
[[deps.ArgTools]]
uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
version = "1.1.1"
[[deps.ArrayLayouts]]
deps = ["FillArrays", "LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "492681bc44fac86804706ddb37da10880a2bd528"
uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
version = "1.10.4"
[[deps.Arrow]]
deps = ["ArrowTypes", "BitIntegers", "CodecLz4", "CodecZstd", "ConcurrentUtilities", "DataAPI", "Dates", "EnumX", "Mmap", "PooledArrays", "SentinelArrays", "Tables", "TimeZones", "TranscodingStreams", "UUIDs"]
git-tree-sha1 = "a3ae633a80f26751041e8c17c091c9e910d5537d"
uuid = "69666777-d1a9-59fb-9406-91d4454c9d45"
version = "2.7.4"
[[deps.ArrowTypes]]
deps = ["Sockets", "UUIDs"]
git-tree-sha1 = "404265cd8128a2515a81d5eae16de90fdef05101"
uuid = "31f734f8-188a-4ce0-8406-c8a06bd891cd"
version = "2.3.0"
[[deps.Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
[[deps.BSplineKit]]
deps = ["ArrayLayouts", "BandedMatrices", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra", "PrecompileTools", "Random", "Reexport", "SparseArrays", "Static", "StaticArrays", "StaticArraysCore"]
git-tree-sha1 = "15ab25b14c48783b1b73f80b14883fce7050daea"
uuid = "093aae92-e908-43d7-9660-e50ee39d5a0a"
version = "0.17.7"
[[deps.BandedMatrices]]
deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools", "SparseArrays"]
git-tree-sha1 = "3023a8cada3b08233252ee9b04edc3f3c39b1f04"
uuid = "aae01518-5342-5314-be14-df237901396f"
version = "1.7.6"
[[deps.Base64]]
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
[[deps.BenchmarkTools]]
deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"]
git-tree-sha1 = "e38fbc49a620f5d0b660d7f543db1009fe0f8336"
uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
version = "1.6.0"
[[deps.BitIntegers]]
deps = ["Random"]
git-tree-sha1 = "6158239ac409f960abbc232a9b24c00f5cce3108"
uuid = "c3b6d118-76ef-56ca-8cc7-ebb389d030a1"
version = "0.3.2"
[[deps.Bzip2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1"
uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0"
version = "1.0.8+4"
[[deps.CEnum]]
git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc"
uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82"
version = "0.5.0"
[[deps.ChainRulesCore]]
deps = ["Compat", "LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "1713c74e00545bfe14605d2a2be1712de8fbcb58"
uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
version = "1.25.1"
[[deps.ChangesOfVariables]]
deps = ["InverseFunctions", "LinearAlgebra", "Test"]
git-tree-sha1 = "799b25ca3a8a24936ae7b5c52ad194685fc3e6ef"
uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0"
version = "0.1.9"
[[deps.CodecBzip2]]
deps = ["Bzip2_jll", "TranscodingStreams"]
git-tree-sha1 = "84990fa864b7f2b4901901ca12736e45ee79068c"
uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd"
version = "0.8.5"
[[deps.CodecLz4]]
deps = ["Lz4_jll", "TranscodingStreams"]
git-tree-sha1 = "0db0c70ca94c0a79cadad269497f25ca88b9fa91"
uuid = "5ba52731-8f18-5e0d-9241-30f10d1ec561"
version = "0.4.5"
[[deps.CodecZlib]]
deps = ["TranscodingStreams", "Zlib_jll"]
git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759"
uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
version = "0.7.6"
[[deps.CodecZstd]]
deps = ["TranscodingStreams", "Zstd_jll"]
git-tree-sha1 = "d0073f473757f0d39ac9707f1eb03b431573cbd8"
uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2"
version = "0.8.6"
[[deps.CommonSubexpressions]]
deps = ["MacroTools"]
git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5"
uuid = "bbf7d656-a473-5ed7-a52c-81e309532950"
version = "0.3.1"
[[deps.Compat]]
deps = ["Dates", "LinearAlgebra", "TOML", "UUIDs"]
git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
version = "4.16.0"
[[deps.CompilerSupportLibraries_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
version = "1.0.1+0"
[[deps.ConcurrentUtilities]]
deps = ["Serialization", "Sockets"]
git-tree-sha1 = "f36e5e8fdffcb5646ea5da81495a5a7566005127"
uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
version = "2.4.3"
[[deps.Crayons]]
git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15"
uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
version = "4.1.1"
[[deps.DataAPI]]
git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe"
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
version = "1.16.0"
[[deps.DataFrames]]
deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
git-tree-sha1 = "db2a9cb664fcea7836da4b414c3278d71dd602d2"
uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
version = "1.3.6"
[[deps.DataStructures]]
deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82"
uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
version = "0.18.20"
[[deps.DataValueInterfaces]]
git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464"
version = "1.0.0"
[[deps.Dates]]
deps = ["Printf"]
uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
[[deps.DensityInterface]]
deps = ["InverseFunctions", "Test"]
git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b"
uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d"
version = "0.4.0"
[[deps.Dictionaries]]
deps = ["Indexing", "Random", "Serialization"]
git-tree-sha1 = "61ab242274c0d44412d8eab38942a49aa46de9d0"
uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4"
version = "0.4.3"
[[deps.DiffResults]]
deps = ["StaticArraysCore"]
git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621"
uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5"
version = "1.1.0"
[[deps.DiffRules]]
deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"]
git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272"
uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
version = "1.15.1"
[[deps.Distributed]]
deps = ["Random", "Serialization", "Sockets"]
uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
[[deps.Distributions]]
deps = ["AliasTables", "ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
git-tree-sha1 = "03aa5d44647eaec98e1920635cdfed5d5560a8b9"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
version = "0.25.117"
[[deps.DocStringExtensions]]
deps = ["LibGit2"]
git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d"
uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
version = "0.9.3"
[[deps.Downloads]]
deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
version = "1.6.0"
[[deps.EnumX]]
git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237"
uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56"
version = "1.0.4"
[[deps.ExprTools]]
git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec"
uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04"
version = "0.1.10"
[[deps.FastGaussQuadrature]]
deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"]
git-tree-sha1 = "fd923962364b645f3719855c88f7074413a6ad92"
uuid = "442a2c76-b920-505d-bb47-c5924d526838"
version = "1.0.2"
[[deps.FileWatching]]
uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
[[deps.FillArrays]]
deps = ["LinearAlgebra", "PDMats", "SparseArrays", "Statistics"]
git-tree-sha1 = "6a70198746448456524cb442b8af316927ff3e1a"
uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
version = "1.13.0"
[[deps.Formatting]]
deps = ["Logging", "Printf"]
git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87"
uuid = "59287772-0a20-5a39-b81b-1366585eb4c0"
version = "0.4.3"
[[deps.ForwardDiff]]
deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"]
git-tree-sha1 = "a2df1b776752e3f344e5116c06d75a10436ab853"
uuid = "f6369f11-7733-5829-9624-2563aa707210"
version = "0.10.38"
[[deps.Future]]
deps = ["Random"]
uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
[[deps.GLM]]
deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"]
git-tree-sha1 = "97829cfda0df99ddaeaafb5b370d6cab87b7013e"
uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a"
version = "1.8.3"
[[deps.HypergeometricFunctions]]
deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"]
git-tree-sha1 = "b1c2585431c382e3fe5805874bda6aea90a95de9"
uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
version = "0.3.25"
[[deps.IfElse]]
git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1"
uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173"
version = "0.1.1"
[[deps.Indexing]]
git-tree-sha1 = "ce1566720fd6b19ff3411404d4b977acd4814f9f"
uuid = "313cdc1a-70c2-5d6a-ae34-0150d3930a38"
version = "1.1.1"
[[deps.InlineStrings]]
deps = ["Parsers"]
git-tree-sha1 = "45521d31238e87ee9f9732561bfee12d4eebd52d"
uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48"
version = "1.4.2"
[[deps.InteractiveUtils]]
deps = ["Markdown"]
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
[[deps.InverseFunctions]]
deps = ["Dates", "Test"]
git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb"
uuid = "3587e190-3f89-42d0-90ee-14403ec27112"
version = "0.1.17"
[[deps.InvertedIndices]]
git-tree-sha1 = "6da3c4316095de0f5ee2ebd875df8721e7e0bdbe"
uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f"
version = "1.3.1"
[[deps.IrrationalConstants]]
git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2"
uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
version = "0.2.2"
[[deps.IteratorInterfaceExtensions]]
git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
uuid = "82899510-4779-5014-852e-03e436cf321d"
version = "1.0.0"
[[deps.JLLWrappers]]
deps = ["Artifacts", "Preferences"]
git-tree-sha1 = "a007feb38b422fbdab534406aeca1b86823cb4d6"
uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
version = "1.7.0"
[[deps.JSON]]
deps = ["Dates", "Mmap", "Parsers", "Unicode"]
git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a"
uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
version = "0.21.4"
[[deps.JSON3]]
deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"]
git-tree-sha1 = "1d322381ef7b087548321d3f878cb4c9bd8f8f9b"
uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1"
version = "1.14.1"
[[deps.JlmerClusterPerm]]
deps = ["DataFrames", "Distributions", "GLM", "MixedModels", "ProgressMeter", "Random", "Random123", "StatsBase", "StatsModels", "Suppressor"]
path = "JlmerClusterPerm"
uuid = "2a59065a-9564-4903-82dd-0e42ce19d0e1"
version = "0.1.1"
[[deps.LazyArtifacts]]
deps = ["Artifacts", "Pkg"]
uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3"
[[deps.LibCURL]]
deps = ["LibCURL_jll", "MozillaCACerts_jll"]
uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
version = "0.6.3"
[[deps.LibCURL_jll]]
deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
version = "7.84.0+0"
[[deps.LibGit2]]
deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
[[deps.LibSSH2_jll]]
deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
version = "1.10.2+0"
[[deps.Libdl]]
uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
[[deps.LinearAlgebra]]
deps = ["Libdl", "libblastrampoline_jll"]
uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
[[deps.LogExpFunctions]]
deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"]
git-tree-sha1 = "a2d09619db4e765091ee5c6ffe8872849de0feea"
uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
version = "0.3.28"
[[deps.Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
[[deps.Lz4_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "191686b1ac1ea9c89fc52e996ad15d1d241d1e33"
uuid = "5ced341a-0733-55b8-9ab6-a4889d929147"
version = "1.10.1+0"
[[deps.MacroTools]]
git-tree-sha1 = "72aebe0b5051e5143a079a4685a46da330a40472"
uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
version = "0.5.15"
[[deps.Markdown]]
deps = ["Base64"]
uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
[[deps.MathOptInterface]]
deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON3", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"]
git-tree-sha1 = "f346e3b50c8bb62b7a5c4961ebdbaef65d1ce1e2"
uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
version = "1.35.1"
[[deps.MbedTLS_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
version = "2.28.0+0"
[[deps.Missings]]
deps = ["DataAPI"]
git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d"
uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
version = "1.2.0"
[[deps.MixedModels]]
deps = ["Arrow", "BSplineKit", "Compat", "DataAPI", "Distributions", "GLM", "JSON3", "LinearAlgebra", "Markdown", "MixedModelsDatasets", "NLopt", "PooledArrays", "PrecompileTools", "ProgressMeter", "Random", "SparseArrays", "StaticArrays", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels", "StructTypes", "Tables", "TypedTables"]
git-tree-sha1 = "5af40242899244ee1a73f48b640425ca93d3ad4f"
uuid = "ff71e718-51f3-5ec2-a782-8ffcbfa3c316"
version = "4.28.0"
[[deps.MixedModelsDatasets]]
deps = ["Arrow", "Artifacts", "LazyArtifacts"]
git-tree-sha1 = "5f508af97ecf39645febed8ba2fabf5cfdc682e0"
uuid = "7e9fb7ac-9f67-43bf-b2c8-96ba0796cbb6"
version = "0.1.1"
[[deps.Mmap]]
uuid = "a63ad114-7e13-5084-954f-fe012c677804"
[[deps.Mocking]]
deps = ["Compat", "ExprTools"]
git-tree-sha1 = "2c140d60d7cb82badf06d8783800d0bcd1a7daa2"
uuid = "78c3b35d-d492-501b-9361-3d52fe80e533"
version = "0.8.1"
[[deps.MozillaCACerts_jll]]
uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
version = "2022.2.1"
[[deps.MutableArithmetics]]
deps = ["LinearAlgebra", "SparseArrays", "Test"]
git-tree-sha1 = "43122df26d27424b23577d59e2d8020f28386516"
uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
version = "1.6.2"
[[deps.NLopt]]
deps = ["CEnum", "MathOptInterface", "NLopt_jll"]
git-tree-sha1 = "dd79cb2a2d779209e42d76795edfde1c778eb5e0"
uuid = "76087f3c-5699-56af-9a33-bf431cd00edd"
version = "1.1.2"
[[deps.NLopt_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "dd645a206cc1e8bc4ff0dcfe3da08e39b60dd662"
uuid = "079eb43e-fd8e-5478-9966-2cf3e3edb778"
version = "2.9.0+0"
[[deps.NaNMath]]
deps = ["OpenLibm_jll"]
git-tree-sha1 = "030ea22804ef91648f29b7ad3fc15fa49d0e6e71"
uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
version = "1.0.3"
[[deps.NetworkOptions]]
uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
version = "1.2.0"
[[deps.OpenBLAS_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
version = "0.3.20+0"
[[deps.OpenLibm_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "05823500-19ac-5b8b-9628-191a04bc5112"
version = "0.8.1+0"
[[deps.OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"]
git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335"
uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
version = "0.5.6+0"
[[deps.OrderedCollections]]
git-tree-sha1 = "12f1439c4f986bb868acda6ea33ebc78e19b95ad"
uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
version = "1.7.0"
[[deps.PDMats]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65"
uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
version = "0.11.31"
[[deps.Parsers]]
deps = ["Dates", "PrecompileTools", "UUIDs"]
git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821"
uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
version = "2.8.1"
[[deps.Pkg]]
deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
version = "1.8.0"
[[deps.PooledArrays]]
deps = ["DataAPI", "Future"]
git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3"
uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720"
version = "1.4.3"
[[deps.PrecompileTools]]
deps = ["Preferences"]
git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f"
uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a"
version = "1.2.1"
[[deps.Preferences]]
deps = ["TOML"]
git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6"
uuid = "21216c6a-2e73-6563-6e65-726566657250"
version = "1.4.3"
[[deps.PrettyTables]]
deps = ["Crayons", "Formatting", "Markdown", "Reexport", "Tables"]
git-tree-sha1 = "dfb54c4e414caa595a1f2ed759b160f5a3ddcba5"
uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
version = "1.3.1"
[[deps.Printf]]
deps = ["Unicode"]
uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
[[deps.Profile]]
deps = ["Printf"]
uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79"
[[deps.ProgressMeter]]
deps = ["Distributed", "Printf"]
git-tree-sha1 = "d7a7aef8f8f2d537104f170139553b14dfe39fe9"
uuid = "92933f4c-e287-5a05-a399-4b506db050ca"
version = "1.7.2"
[[deps.PtrArrays]]
git-tree-sha1 = "1d36ef11a9aaf1e8b74dacc6a731dd1de8fd493d"
uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d"
version = "1.3.0"
[[deps.QuadGK]]
deps = ["DataStructures", "LinearAlgebra"]
git-tree-sha1 = "cda3b045cf9ef07a08ad46731f5a3165e56cf3da"
uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
version = "2.11.1"
[[deps.REPL]]
deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
[[deps.Random]]
deps = ["SHA", "Serialization"]
uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
[[deps.Random123]]
deps = ["Random", "RandomNumbers"]
git-tree-sha1 = "c860e84651f58ce240dd79e5d9e055d55234c35a"
uuid = "74087812-796a-5b5d-8853-05524746bad3"
version = "1.6.2"
[[deps.RandomNumbers]]
deps = ["Random"]
git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902"
uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143"
version = "1.6.0"
[[deps.RecipesBase]]
deps = ["PrecompileTools"]
git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff"
uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
version = "1.3.4"
[[deps.Reexport]]
git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
uuid = "189a3867-3050-52da-a836-e630ba90ab69"
version = "1.2.2"
[[deps.Requires]]
deps = ["UUIDs"]
git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7"
uuid = "ae029012-a4dd-5104-9daa-d747884805df"
version = "1.3.0"
[[deps.Rmath]]
deps = ["Random", "Rmath_jll"]
git-tree-sha1 = "852bd0f55565a9e973fcfee83a84413270224dc4"
uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa"
version = "0.8.0"
[[deps.Rmath_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8"
uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
version = "0.5.1+0"
[[deps.SHA]]
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
version = "0.7.0"
[[deps.Scratch]]
deps = ["Dates"]
git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386"
uuid = "6c6a2e73-6563-6170-7368-637461726353"
version = "1.2.1"
[[deps.SentinelArrays]]
deps = ["Dates", "Random"]
git-tree-sha1 = "712fb0231ee6f9120e005ccd56297abbc053e7e0"
uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c"
version = "1.4.8"
[[deps.Serialization]]
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
[[deps.ShiftedArrays]]
git-tree-sha1 = "503688b59397b3307443af35cd953a13e8005c16"
uuid = "1277b4bf-5013-50f5-be3d-901d8477a67a"
version = "2.0.0"
[[deps.Sockets]]
uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
[[deps.SortingAlgorithms]]
deps = ["DataStructures"]
git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085"
uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
version = "1.2.1"
[[deps.SparseArrays]]
deps = ["LinearAlgebra", "Random"]
uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
[[deps.SpecialFunctions]]
deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
git-tree-sha1 = "64cca0c26b4f31ba18f13f6c12af7c85f478cfde"
uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
version = "2.5.0"
[[deps.SplitApplyCombine]]
deps = ["Dictionaries", "Indexing"]
git-tree-sha1 = "c06d695d51cfb2187e6848e98d6252df9101c588"
uuid = "03a91e81-4c3e-53e1-a0a4-9c0c8f19dd66"
version = "1.2.3"
[[deps.Static]]
deps = ["IfElse"]
git-tree-sha1 = "b366eb1eb68075745777d80861c6706c33f588ae"
uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
version = "0.8.9"
[[deps.StaticArrays]]
deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore", "Statistics"]
git-tree-sha1 = "47091a0340a675c738b1304b58161f3b0839d454"
uuid = "90137ffa-7385-5640-81b9-e52037218182"
version = "1.9.10"
[[deps.StaticArraysCore]]
git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682"
uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
version = "1.4.3"
[[deps.Statistics]]
deps = ["LinearAlgebra", "SparseArrays"]
uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
[[deps.StatsAPI]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed"
uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
version = "1.7.0"
[[deps.StatsBase]]
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916"
uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
version = "0.33.21"
[[deps.StatsFuns]]
deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
git-tree-sha1 = "b423576adc27097764a90e163157bcfc9acf0f46"
uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
version = "1.3.2"
[[deps.StatsModels]]
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"]
git-tree-sha1 = "9022bcaa2fc1d484f1326eaa4db8db543ca8c66d"
uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d"
version = "0.7.4"
[[deps.StructTypes]]
deps = ["Dates", "UUIDs"]
git-tree-sha1 = "159331b30e94d7b11379037feeb9b690950cace8"
uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4"
version = "1.11.0"
[[deps.SuiteSparse]]
deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
[[deps.Suppressor]]
deps = ["Logging"]
git-tree-sha1 = "6dbb5b635c5437c68c28c2ac9e39b87138f37c0a"
uuid = "fd094767-a336-5f1f-9728-57cf17d0bbfb"
version = "0.2.8"
[[deps.TOML]]
deps = ["Dates"]
uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
version = "1.0.0"
[[deps.TZJData]]
deps = ["Artifacts"]
git-tree-sha1 = "006a327222dda856e2304959e566ff0104ac8594"
uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7"
version = "1.3.1+2024b"
[[deps.TableTraits]]
deps = ["IteratorInterfaceExtensions"]
git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39"
uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
version = "1.0.1"
[[deps.Tables]]
deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"]
git-tree-sha1 = "598cd7c1f68d1e205689b1c2fe65a9f85846f297"
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
version = "1.12.0"
[[deps.Tar]]
deps = ["ArgTools", "SHA"]
uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
version = "1.10.1"
[[deps.Test]]
deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
[[deps.TimeZones]]
deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "RecipesBase", "Scratch", "TZJData", "Unicode", "p7zip_jll"]
git-tree-sha1 = "fcbcffdc11524d08523e92ae52214b29d90b50bb"
uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53"
version = "1.20.0"
[[deps.TranscodingStreams]]
git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742"
uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
version = "0.11.3"
[[deps.TypedTables]]
deps = ["Adapt", "Dictionaries", "Indexing", "SplitApplyCombine", "Tables", "Unicode"]
git-tree-sha1 = "84fd7dadde577e01eb4323b7e7b9cb51c62c60d4"
uuid = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9"
version = "1.4.6"
[[deps.UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
[[deps.Unicode]]
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
[[deps.Zlib_jll]]
deps = ["Libdl"]
uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
version = "1.2.12+3"
[[deps.Zstd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "622cf78670d067c738667aaa96c553430b65e269"
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.5.7+0"
[[deps.libblastrampoline_jll]]
deps = ["Artifacts", "Libdl", "OpenBLAS_jll"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.1.1+0"
[[deps.nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
version = "1.48.0+0"
[[deps.p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
version = "17.4.0+0"
i Starting Julia with 2 threads
v Starting Julia with 2 threads [5.3s]
i Activating package environment
v Activating package environment [6s]
i Running package setup scripts (1/11)
i Running package setup scripts (5/11)
x Failed to compile jlmerclusterperm. Please submit an issue to <https://github.com/yjunechoe/jlmerclusterperm/issues>.
i Running package setup scripts (5/11)
x Running package setup scripts (6/11) [2.2s]
Starting Julia ...
✖ Failed to compile jlmerclusterperm. Please submit an issue to <https://github.com/yjunechoe/jlmerclusterperm/issues>.
[ FAIL 4 | WARN 0 | SKIP 7 | PASS 5 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
• On CRAN (7): 'test-jlmer.R:1:1', 'test-julia_rng.R:1:1',
'test-permute.R:1:1', 'test-progress.R:1:1', 'test-singularity.R:1:1',
'test-threshold_search.R:1:1', 'test-timewise_statistics.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-aaa-b-setup.R:7:3'): Setup with seed works (use 2 for testing) ──
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: ArgumentError: Package Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] is required but does not seem to be installed:
- Run `Pkg.instantiate()` to install all recorded dependencies.
Stacktrace:
[1] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1306
[2] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[3] macro expansion
@ .\loading.jl:1180 [inlined]
[4] macro expansion
@ .\lock.jl:223 [inlined]
[5] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[6] eval
@ .\boot.jl:368 [inlined]
[7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[8] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[9] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150
[10] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[11] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[12] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67
[13] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55
[14] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185
[15] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_true(...) at test-aaa-b-setup.R:7:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::jlmerclusterperm_setup(...)
5. └─jlmerclusterperm:::setup_with_progress(...)
6. ├─base::withCallingHandlers(...)
7. └─jlmerclusterperm:::source_jl(verbose = verbose)
8. └─JuliaConnectoR::juliaEval(jl_pkgs[i])
9. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
10. ├─base::tryCatch(...)
11. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
12. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
13. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
14. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
15. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Failure ('test-aaa-b-setup.R:13:3'): RNG initializes to seed=1 counter=0 ────
get_rng_seed() (`actual`) not equal to 1 (`expected`).
`actual` is NULL
`expected` is a double vector (1)
── Error ('test-aaa-b-setup.R:14:3'): RNG initializes to seed=1 counter=0 ──────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: UndefVarError: rng not defined
Stacktrace:
[1] top-level scope
@ string:1
[2] eval
@ .\boot.jl:368 [inlined]
[3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[4] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[5] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150
[6] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[7] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[8] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67
[9] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55
[10] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185
[11] serve(port_hint::Int64; multiclient::Bool, portfile::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:152
[12] top-level scope
@ D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\main.jl:23
[13] include(mod::Module, _path::String)
@ Base .\Base.jl:419
[14] exec_options(opts::Base.JLOptions)
@ Base .\client.jl:303
[15] _start()
@ Base .\client.jl:522
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_equal(get_rng_state(), 0) at test-aaa-b-setup.R:14:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::get_rng_state()
5. └─JuliaConnectoR::juliaEval("Int(rng.ctr1)")
6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
7. ├─base::tryCatch(...)
8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
12. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Error ('test-clusterpermute.R:3:1'): (code run outside of `test_that()`) ────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: ArgumentError: Package Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] is required but does not seem to be installed:
- Run `Pkg.instantiate()` to install all recorded dependencies.
Stacktrace:
[1] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1306
[2] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[3] macro expansion
@ .\loading.jl:1180 [inlined]
[4] macro expansion
@ .\lock.jl:223 [inlined]
[5] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[6] eval
@ .\boot.jl:368 [inlined]
[7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[8] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[9] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150
[10] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[11] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[12] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67
[13] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55
[14] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185
[15] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:1
Backtrace:
▆
1. └─jlmerclusterperm::jlmerclusterperm_setup(...) at test-clusterpermute.R:3:1
2. └─jlmerclusterperm:::setup_with_progress(...)
3. ├─base::withCallingHandlers(...)
4. └─jlmerclusterperm:::source_jl(verbose = verbose)
5. └─JuliaConnectoR::juliaEval(jl_pkgs[i])
6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
7. ├─base::tryCatch(...)
8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
12. └─JuliaConnectoR:::handleCallbacksAndOutput()
[ FAIL 4 | WARN 0 | SKIP 7 | PASS 5 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running 'testthat.R' [122s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(jlmerclusterperm)
>
> test_check("jlmerclusterperm")
Julia Version 1.8.0
Commit 5544a0fab7 (2022-08-17 13:38 UTC)
Platform Info:
OS: Windows (x86_64-w64-mingw32)
CPU: 56 × Intel(R) Xeon(R) CPU E5-2680 v4 @ 2.40GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-13.0.1 (ORCJIT, broadwell)
Threads: 1 on 56 virtual cores
nothing
ℹ Starting Julia with 2 threads
✔ Starting Julia with 2 threads [7.5s]
ℹ Activating package environment
Precompiling project...
✗ GLM
✗ MixedModels
✗ JlmerClusterPerm
0 dependencies successfully precompiled in 40 seconds. 105 already precompiled.
4 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages
✔ Activating package environment [50.9s]
Status `D:\temp\2025_01_22_01_50_00_23758\RtmpAny0ej\julia\Project.toml`
⌅ [a93c6f00] DataFrames v1.3.6
[31c24e10] Distributions v0.25.117
⌅ [38e38edf] GLM v1.8.3
[2a59065a] JlmerClusterPerm v0.1.1 `JlmerClusterPerm`
[ff71e718] MixedModels v4.28.0
⌅ [92933f4c] ProgressMeter v1.7.2
⌅ [74087812] Random123 v1.6.2
⌃ [2913bbd2] StatsBase v0.33.21
[3eaba693] StatsModels v0.7.4
[fd094767] Suppressor v0.2.8
[9a3f8284] Random
Info Packages marked with ⌃ and ⌅ have new versions available, but those with ⌅ cannot be upgraded. To see why use `status --outdated`
# This file is machine-generated - editing it directly is not advised
julia_version = "1.8.0"
manifest_format = "2.0"
project_hash = "b0139eba902ff9867040133671a74aadd06234b1"
[[deps.Adapt]]
deps = ["LinearAlgebra", "Requires"]
git-tree-sha1 = "50c3c56a52972d78e8be9fd135bfb91c9574c140"
uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
version = "4.1.1"
[[deps.AliasTables]]
deps = ["PtrArrays", "Random"]
git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff"
uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8"
version = "1.1.3"
[[deps.ArgTools]]
uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
version = "1.1.1"
[[deps.ArrayLayouts]]
deps = ["FillArrays", "LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "492681bc44fac86804706ddb37da10880a2bd528"
uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
version = "1.10.4"
[[deps.Arrow]]
deps = ["ArrowTypes", "BitIntegers", "CodecLz4", "CodecZstd", "ConcurrentUtilities", "DataAPI", "Dates", "EnumX", "Mmap", "PooledArrays", "SentinelArrays", "Tables", "TimeZones", "TranscodingStreams", "UUIDs"]
git-tree-sha1 = "a3ae633a80f26751041e8c17c091c9e910d5537d"
uuid = "69666777-d1a9-59fb-9406-91d4454c9d45"
version = "2.7.4"
[[deps.ArrowTypes]]
deps = ["Sockets", "UUIDs"]
git-tree-sha1 = "404265cd8128a2515a81d5eae16de90fdef05101"
uuid = "31f734f8-188a-4ce0-8406-c8a06bd891cd"
version = "2.3.0"
[[deps.Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
[[deps.BSplineKit]]
deps = ["ArrayLayouts", "BandedMatrices", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra", "PrecompileTools", "Random", "Reexport", "SparseArrays", "Static", "StaticArrays", "StaticArraysCore"]
git-tree-sha1 = "15ab25b14c48783b1b73f80b14883fce7050daea"
uuid = "093aae92-e908-43d7-9660-e50ee39d5a0a"
version = "0.17.7"
[[deps.BandedMatrices]]
deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools", "SparseArrays"]
git-tree-sha1 = "3023a8cada3b08233252ee9b04edc3f3c39b1f04"
uuid = "aae01518-5342-5314-be14-df237901396f"
version = "1.7.6"
[[deps.Base64]]
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
[[deps.BenchmarkTools]]
deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"]
git-tree-sha1 = "e38fbc49a620f5d0b660d7f543db1009fe0f8336"
uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
version = "1.6.0"
[[deps.BitIntegers]]
deps = ["Random"]
git-tree-sha1 = "6158239ac409f960abbc232a9b24c00f5cce3108"
uuid = "c3b6d118-76ef-56ca-8cc7-ebb389d030a1"
version = "0.3.2"
[[deps.Bzip2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1"
uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0"
version = "1.0.8+4"
[[deps.CEnum]]
git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc"
uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82"
version = "0.5.0"
[[deps.ChainRulesCore]]
deps = ["Compat", "LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "1713c74e00545bfe14605d2a2be1712de8fbcb58"
uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
version = "1.25.1"
[[deps.ChangesOfVariables]]
deps = ["InverseFunctions", "LinearAlgebra", "Test"]
git-tree-sha1 = "799b25ca3a8a24936ae7b5c52ad194685fc3e6ef"
uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0"
version = "0.1.9"
[[deps.CodecBzip2]]
deps = ["Bzip2_jll", "TranscodingStreams"]
git-tree-sha1 = "84990fa864b7f2b4901901ca12736e45ee79068c"
uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd"
version = "0.8.5"
[[deps.CodecLz4]]
deps = ["Lz4_jll", "TranscodingStreams"]
git-tree-sha1 = "0db0c70ca94c0a79cadad269497f25ca88b9fa91"
uuid = "5ba52731-8f18-5e0d-9241-30f10d1ec561"
version = "0.4.5"
[[deps.CodecZlib]]
deps = ["TranscodingStreams", "Zlib_jll"]
git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759"
uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
version = "0.7.6"
[[deps.CodecZstd]]
deps = ["TranscodingStreams", "Zstd_jll"]
git-tree-sha1 = "d0073f473757f0d39ac9707f1eb03b431573cbd8"
uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2"
version = "0.8.6"
[[deps.CommonSubexpressions]]
deps = ["MacroTools"]
git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5"
uuid = "bbf7d656-a473-5ed7-a52c-81e309532950"
version = "0.3.1"
[[deps.Compat]]
deps = ["Dates", "LinearAlgebra", "TOML", "UUIDs"]
git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
version = "4.16.0"
[[deps.CompilerSupportLibraries_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
version = "0.5.2+0"
[[deps.ConcurrentUtilities]]
deps = ["Serialization", "Sockets"]
git-tree-sha1 = "f36e5e8fdffcb5646ea5da81495a5a7566005127"
uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
version = "2.4.3"
[[deps.Crayons]]
git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15"
uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
version = "4.1.1"
[[deps.DataAPI]]
git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe"
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
version = "1.16.0"
[[deps.DataFrames]]
deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
git-tree-sha1 = "db2a9cb664fcea7836da4b414c3278d71dd602d2"
uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
version = "1.3.6"
[[deps.DataStructures]]
deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82"
uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
version = "0.18.20"
[[deps.DataValueInterfaces]]
git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464"
version = "1.0.0"
[[deps.Dates]]
deps = ["Printf"]
uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
[[deps.DensityInterface]]
deps = ["InverseFunctions", "Test"]
git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b"
uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d"
version = "0.4.0"
[[deps.Dictionaries]]
deps = ["Indexing", "Random", "Serialization"]
git-tree-sha1 = "61ab242274c0d44412d8eab38942a49aa46de9d0"
uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4"
version = "0.4.3"
[[deps.DiffResults]]
deps = ["StaticArraysCore"]
git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621"
uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5"
version = "1.1.0"
[[deps.DiffRules]]
deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"]
git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272"
uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
version = "1.15.1"
[[deps.Distributed]]
deps = ["Random", "Serialization", "Sockets"]
uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
[[deps.Distributions]]
deps = ["AliasTables", "ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
git-tree-sha1 = "03aa5d44647eaec98e1920635cdfed5d5560a8b9"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
version = "0.25.117"
[[deps.DocStringExtensions]]
deps = ["LibGit2"]
git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d"
uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
version = "0.9.3"
[[deps.Downloads]]
deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
version = "1.6.0"
[[deps.EnumX]]
git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237"
uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56"
version = "1.0.4"
[[deps.ExprTools]]
git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec"
uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04"
version = "0.1.10"
[[deps.FastGaussQuadrature]]
deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"]
git-tree-sha1 = "fd923962364b645f3719855c88f7074413a6ad92"
uuid = "442a2c76-b920-505d-bb47-c5924d526838"
version = "1.0.2"
[[deps.FileWatching]]
uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
[[deps.FillArrays]]
deps = ["LinearAlgebra", "PDMats", "SparseArrays", "Statistics"]
git-tree-sha1 = "6a70198746448456524cb442b8af316927ff3e1a"
uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
version = "1.13.0"
[[deps.Formatting]]
deps = ["Logging", "Printf"]
git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87"
uuid = "59287772-0a20-5a39-b81b-1366585eb4c0"
version = "0.4.3"
[[deps.ForwardDiff]]
deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"]
git-tree-sha1 = "a2df1b776752e3f344e5116c06d75a10436ab853"
uuid = "f6369f11-7733-5829-9624-2563aa707210"
version = "0.10.38"
[[deps.Future]]
deps = ["Random"]
uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
[[deps.GLM]]
deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"]
git-tree-sha1 = "97829cfda0df99ddaeaafb5b370d6cab87b7013e"
uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a"
version = "1.8.3"
[[deps.HypergeometricFunctions]]
deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"]
git-tree-sha1 = "b1c2585431c382e3fe5805874bda6aea90a95de9"
uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
version = "0.3.25"
[[deps.IfElse]]
git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1"
uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173"
version = "0.1.1"
[[deps.Indexing]]
git-tree-sha1 = "ce1566720fd6b19ff3411404d4b977acd4814f9f"
uuid = "313cdc1a-70c2-5d6a-ae34-0150d3930a38"
version = "1.1.1"
[[deps.InlineStrings]]
deps = ["Parsers"]
git-tree-sha1 = "45521d31238e87ee9f9732561bfee12d4eebd52d"
uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48"
version = "1.4.2"
[[deps.InteractiveUtils]]
deps = ["Markdown"]
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
[[deps.InverseFunctions]]
deps = ["Dates", "Test"]
git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb"
uuid = "3587e190-3f89-42d0-90ee-14403ec27112"
version = "0.1.17"
[[deps.InvertedIndices]]
git-tree-sha1 = "6da3c4316095de0f5ee2ebd875df8721e7e0bdbe"
uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f"
version = "1.3.1"
[[deps.IrrationalConstants]]
git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2"
uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
version = "0.2.2"
[[deps.IteratorInterfaceExtensions]]
git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
uuid = "82899510-4779-5014-852e-03e436cf321d"
version = "1.0.0"
[[deps.JLLWrappers]]
deps = ["Artifacts", "Preferences"]
git-tree-sha1 = "a007feb38b422fbdab534406aeca1b86823cb4d6"
uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
version = "1.7.0"
[[deps.JSON]]
deps = ["Dates", "Mmap", "Parsers", "Unicode"]
git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a"
uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
version = "0.21.4"
[[deps.JSON3]]
deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"]
git-tree-sha1 = "1d322381ef7b087548321d3f878cb4c9bd8f8f9b"
uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1"
version = "1.14.1"
[[deps.JlmerClusterPerm]]
deps = ["DataFrames", "Distributions", "GLM", "MixedModels", "ProgressMeter", "Random", "Random123", "StatsBase", "StatsModels", "Suppressor"]
path = "JlmerClusterPerm"
uuid = "2a59065a-9564-4903-82dd-0e42ce19d0e1"
version = "0.1.1"
[[deps.LazyArtifacts]]
deps = ["Artifacts", "Pkg"]
uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3"
[[deps.LibCURL]]
deps = ["LibCURL_jll", "MozillaCACerts_jll"]
uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
version = "0.6.3"
[[deps.LibCURL_jll]]
deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
version = "7.84.0+0"
[[deps.LibGit2]]
deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
[[deps.LibSSH2_jll]]
deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
version = "1.10.2+0"
[[deps.Libdl]]
uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
[[deps.LinearAlgebra]]
deps = ["Libdl", "libblastrampoline_jll"]
uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
[[deps.LogExpFunctions]]
deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"]
git-tree-sha1 = "a2d09619db4e765091ee5c6ffe8872849de0feea"
uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
version = "0.3.28"
[[deps.Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
[[deps.Lz4_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "191686b1ac1ea9c89fc52e996ad15d1d241d1e33"
uuid = "5ced341a-0733-55b8-9ab6-a4889d929147"
version = "1.10.1+0"
[[deps.MacroTools]]
git-tree-sha1 = "72aebe0b5051e5143a079a4685a46da330a40472"
uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
version = "0.5.15"
[[deps.Markdown]]
deps = ["Base64"]
uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
[[deps.MathOptInterface]]
deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON3", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"]
git-tree-sha1 = "f346e3b50c8bb62b7a5c4961ebdbaef65d1ce1e2"
uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
version = "1.35.1"
[[deps.MbedTLS_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
version = "2.28.0+0"
[[deps.Missings]]
deps = ["DataAPI"]
git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d"
uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
version = "1.2.0"
[[deps.MixedModels]]
deps = ["Arrow", "BSplineKit", "Compat", "DataAPI", "Distributions", "GLM", "JSON3", "LinearAlgebra", "Markdown", "MixedModelsDatasets", "NLopt", "PooledArrays", "PrecompileTools", "ProgressMeter", "Random", "SparseArrays", "StaticArrays", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels", "StructTypes", "Tables", "TypedTables"]
git-tree-sha1 = "5af40242899244ee1a73f48b640425ca93d3ad4f"
uuid = "ff71e718-51f3-5ec2-a782-8ffcbfa3c316"
version = "4.28.0"
[[deps.MixedModelsDatasets]]
deps = ["Arrow", "Artifacts", "LazyArtifacts"]
git-tree-sha1 = "5f508af97ecf39645febed8ba2fabf5cfdc682e0"
uuid = "7e9fb7ac-9f67-43bf-b2c8-96ba0796cbb6"
version = "0.1.1"
[[deps.Mmap]]
uuid = "a63ad114-7e13-5084-954f-fe012c677804"
[[deps.Mocking]]
deps = ["Compat", "ExprTools"]
git-tree-sha1 = "2c140d60d7cb82badf06d8783800d0bcd1a7daa2"
uuid = "78c3b35d-d492-501b-9361-3d52fe80e533"
version = "0.8.1"
[[deps.MozillaCACerts_jll]]
uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
version = "2022.2.1"
[[deps.MutableArithmetics]]
deps = ["LinearAlgebra", "SparseArrays", "Test"]
git-tree-sha1 = "43122df26d27424b23577d59e2d8020f28386516"
uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
version = "1.6.2"
[[deps.NLopt]]
deps = ["CEnum", "MathOptInterface", "NLopt_jll"]
git-tree-sha1 = "dd79cb2a2d779209e42d76795edfde1c778eb5e0"
uuid = "76087f3c-5699-56af-9a33-bf431cd00edd"
version = "1.1.2"
[[deps.NLopt_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "dd645a206cc1e8bc4ff0dcfe3da08e39b60dd662"
uuid = "079eb43e-fd8e-5478-9966-2cf3e3edb778"
version = "2.9.0+0"
[[deps.NaNMath]]
deps = ["OpenLibm_jll"]
git-tree-sha1 = "030ea22804ef91648f29b7ad3fc15fa49d0e6e71"
uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
version = "1.0.3"
[[deps.NetworkOptions]]
uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
version = "1.2.0"
[[deps.OpenBLAS_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
version = "0.3.20+0"
[[deps.OpenLibm_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "05823500-19ac-5b8b-9628-191a04bc5112"
version = "0.8.1+0"
[[deps.OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"]
git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335"
uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
version = "0.5.6+0"
[[deps.OrderedCollections]]
git-tree-sha1 = "12f1439c4f986bb868acda6ea33ebc78e19b95ad"
uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
version = "1.7.0"
[[deps.PDMats]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65"
uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
version = "0.11.31"
[[deps.Parsers]]
deps = ["Dates", "PrecompileTools", "UUIDs"]
git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821"
uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
version = "2.8.1"
[[deps.Pkg]]
deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
version = "1.8.0"
[[deps.PooledArrays]]
deps = ["DataAPI", "Future"]
git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3"
uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720"
version = "1.4.3"
[[deps.PrecompileTools]]
deps = ["Preferences"]
git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f"
uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a"
version = "1.2.1"
[[deps.Preferences]]
deps = ["TOML"]
git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6"
uuid = "21216c6a-2e73-6563-6e65-726566657250"
version = "1.4.3"
[[deps.PrettyTables]]
deps = ["Crayons", "Formatting", "Markdown", "Reexport", "Tables"]
git-tree-sha1 = "dfb54c4e414caa595a1f2ed759b160f5a3ddcba5"
uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
version = "1.3.1"
[[deps.Printf]]
deps = ["Unicode"]
uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
[[deps.Profile]]
deps = ["Printf"]
uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79"
[[deps.ProgressMeter]]
deps = ["Distributed", "Printf"]
git-tree-sha1 = "d7a7aef8f8f2d537104f170139553b14dfe39fe9"
uuid = "92933f4c-e287-5a05-a399-4b506db050ca"
version = "1.7.2"
[[deps.PtrArrays]]
git-tree-sha1 = "1d36ef11a9aaf1e8b74dacc6a731dd1de8fd493d"
uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d"
version = "1.3.0"
[[deps.QuadGK]]
deps = ["DataStructures", "LinearAlgebra"]
git-tree-sha1 = "cda3b045cf9ef07a08ad46731f5a3165e56cf3da"
uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
version = "2.11.1"
[[deps.REPL]]
deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
[[deps.Random]]
deps = ["SHA", "Serialization"]
uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
[[deps.Random123]]
deps = ["Random", "RandomNumbers"]
git-tree-sha1 = "c860e84651f58ce240dd79e5d9e055d55234c35a"
uuid = "74087812-796a-5b5d-8853-05524746bad3"
version = "1.6.2"
[[deps.RandomNumbers]]
deps = ["Random"]
git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902"
uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143"
version = "1.6.0"
[[deps.RecipesBase]]
deps = ["PrecompileTools"]
git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff"
uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
version = "1.3.4"
[[deps.Reexport]]
git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
uuid = "189a3867-3050-52da-a836-e630ba90ab69"
version = "1.2.2"
[[deps.Requires]]
deps = ["UUIDs"]
git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7"
uuid = "ae029012-a4dd-5104-9daa-d747884805df"
version = "1.3.0"
[[deps.Rmath]]
deps = ["Random", "Rmath_jll"]
git-tree-sha1 = "852bd0f55565a9e973fcfee83a84413270224dc4"
uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa"
version = "0.8.0"
[[deps.Rmath_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8"
uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
version = "0.5.1+0"
[[deps.SHA]]
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
version = "0.7.0"
[[deps.Scratch]]
deps = ["Dates"]
git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386"
uuid = "6c6a2e73-6563-6170-7368-637461726353"
version = "1.2.1"
[[deps.SentinelArrays]]
deps = ["Dates", "Random"]
git-tree-sha1 = "712fb0231ee6f9120e005ccd56297abbc053e7e0"
uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c"
version = "1.4.8"
[[deps.Serialization]]
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
[[deps.ShiftedArrays]]
git-tree-sha1 = "503688b59397b3307443af35cd953a13e8005c16"
uuid = "1277b4bf-5013-50f5-be3d-901d8477a67a"
version = "2.0.0"
[[deps.Sockets]]
uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
[[deps.SortingAlgorithms]]
deps = ["DataStructures"]
git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085"
uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
version = "1.2.1"
[[deps.SparseArrays]]
deps = ["LinearAlgebra", "Random"]
uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
[[deps.SpecialFunctions]]
deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
git-tree-sha1 = "64cca0c26b4f31ba18f13f6c12af7c85f478cfde"
uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
version = "2.5.0"
[[deps.SplitApplyCombine]]
deps = ["Dictionaries", "Indexing"]
git-tree-sha1 = "c06d695d51cfb2187e6848e98d6252df9101c588"
uuid = "03a91e81-4c3e-53e1-a0a4-9c0c8f19dd66"
version = "1.2.3"
[[deps.Static]]
deps = ["IfElse"]
git-tree-sha1 = "b366eb1eb68075745777d80861c6706c33f588ae"
uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
version = "0.8.9"
[[deps.StaticArrays]]
deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore", "Statistics"]
git-tree-sha1 = "47091a0340a675c738b1304b58161f3b0839d454"
uuid = "90137ffa-7385-5640-81b9-e52037218182"
version = "1.9.10"
[[deps.StaticArraysCore]]
git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682"
uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
version = "1.4.3"
[[deps.Statistics]]
deps = ["LinearAlgebra", "SparseArrays"]
uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
[[deps.StatsAPI]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed"
uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
version = "1.7.0"
[[deps.StatsBase]]
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916"
uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
version = "0.33.21"
[[deps.StatsFuns]]
deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
git-tree-sha1 = "b423576adc27097764a90e163157bcfc9acf0f46"
uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
version = "1.3.2"
[[deps.StatsModels]]
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"]
git-tree-sha1 = "9022bcaa2fc1d484f1326eaa4db8db543ca8c66d"
uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d"
version = "0.7.4"
[[deps.StructTypes]]
deps = ["Dates", "UUIDs"]
git-tree-sha1 = "159331b30e94d7b11379037feeb9b690950cace8"
uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4"
version = "1.11.0"
[[deps.SuiteSparse]]
deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
[[deps.Suppressor]]
deps = ["Logging"]
git-tree-sha1 = "6dbb5b635c5437c68c28c2ac9e39b87138f37c0a"
uuid = "fd094767-a336-5f1f-9728-57cf17d0bbfb"
version = "0.2.8"
[[deps.TOML]]
deps = ["Dates"]
uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
version = "1.0.0"
[[deps.TZJData]]
deps = ["Artifacts"]
git-tree-sha1 = "006a327222dda856e2304959e566ff0104ac8594"
uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7"
version = "1.3.1+2024b"
[[deps.TableTraits]]
deps = ["IteratorInterfaceExtensions"]
git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39"
uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
version = "1.0.1"
[[deps.Tables]]
deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"]
git-tree-sha1 = "598cd7c1f68d1e205689b1c2fe65a9f85846f297"
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
version = "1.12.0"
[[deps.Tar]]
deps = ["ArgTools", "SHA"]
uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
version = "1.10.0"
[[deps.Test]]
deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
[[deps.TimeZones]]
deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "RecipesBase", "Scratch", "TZJData", "Unicode", "p7zip_jll"]
git-tree-sha1 = "fcbcffdc11524d08523e92ae52214b29d90b50bb"
uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53"
version = "1.20.0"
[[deps.TranscodingStreams]]
git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742"
uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
version = "0.11.3"
[[deps.TypedTables]]
deps = ["Adapt", "Dictionaries", "Indexing", "SplitApplyCombine", "Tables", "Unicode"]
git-tree-sha1 = "84fd7dadde577e01eb4323b7e7b9cb51c62c60d4"
uuid = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9"
version = "1.4.6"
[[deps.UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
[[deps.Unicode]]
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
[[deps.Zlib_jll]]
deps = ["Libdl"]
uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
version = "1.2.12+3"
[[deps.Zstd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "622cf78670d067c738667aaa96c553430b65e269"
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.5.7+0"
[[deps.libblastrampoline_jll]]
deps = ["Artifacts", "Libdl", "OpenBLAS_jll"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.1.1+0"
[[deps.nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
version = "1.48.0+0"
[[deps.p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
version = "17.4.0+0"
i Starting Julia with 2 threads
v Starting Julia with 2 threads [6.7s]
i Activating package environment
v Activating package environment [11.6s]
i Running package setup scripts (1/11)
i Running package setup scripts (6/11)
x Failed to compile jlmerclusterperm. Please submit an issue to <https://github.com/yjunechoe/jlmerclusterperm/issues>.
i Running package setup scripts (6/11)
x Running package setup scripts (6/11) [3.9s]
Starting Julia ...
✖ Failed to compile jlmerclusterperm. Please submit an issue to <https://github.com/yjunechoe/jlmerclusterperm/issues>.
[ FAIL 4 | WARN 0 | SKIP 7 | PASS 5 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
• On CRAN (7): 'test-jlmer.R:1:1', 'test-julia_rng.R:1:1',
'test-permute.R:1:1', 'test-progress.R:1:1', 'test-singularity.R:1:1',
'test-threshold_search.R:1:1', 'test-timewise_statistics.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-aaa-b-setup.R:7:3'): Setup with seed works (use 2 for testing) ──
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: ArgumentError: Package Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] is required but does not seem to be installed:
- Run `Pkg.instantiate()` to install all recorded dependencies.
Stacktrace:
[1] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1306
[2] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[3] macro expansion
@ .\loading.jl:1180 [inlined]
[4] macro expansion
@ .\lock.jl:223 [inlined]
[5] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[6] eval
@ .\boot.jl:368 [inlined]
[7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[8] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[9] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
[10] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[11] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[12] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67
[13] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
[14] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
[15] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_true(...) at test-aaa-b-setup.R:7:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::jlmerclusterperm_setup(...)
5. └─jlmerclusterperm:::setup_with_progress(...)
6. ├─base::withCallingHandlers(...)
7. └─jlmerclusterperm:::source_jl(verbose = verbose)
8. └─JuliaConnectoR::juliaEval(jl_pkgs[i])
9. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
10. ├─base::tryCatch(...)
11. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
12. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
13. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
14. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
15. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Failure ('test-aaa-b-setup.R:13:3'): RNG initializes to seed=1 counter=0 ────
get_rng_seed() (`actual`) not equal to 1 (`expected`).
`actual` is NULL
`expected` is a double vector (1)
── Error ('test-aaa-b-setup.R:14:3'): RNG initializes to seed=1 counter=0 ──────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: UndefVarError: rng not defined
Stacktrace:
[1] top-level scope
@ string:1
[2] eval
@ .\boot.jl:368 [inlined]
[3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[4] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[5] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
[6] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[7] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[8] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67
[9] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
[10] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
[11] serve(port_hint::Int64; multiclient::Bool, portfile::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:152
[12] top-level scope
@ D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\main.jl:23
[13] include(mod::Module, _path::String)
@ Base .\Base.jl:419
[14] exec_options(opts::Base.JLOptions)
@ Base .\client.jl:303
[15] _start()
@ Base .\client.jl:522
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_equal(get_rng_state(), 0) at test-aaa-b-setup.R:14:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::get_rng_state()
5. └─JuliaConnectoR::juliaEval("Int(rng.ctr1)")
6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
7. ├─base::tryCatch(...)
8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
12. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Error ('test-clusterpermute.R:3:1'): (code run outside of `test_that()`) ────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: ArgumentError: Package Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] is required but does not seem to be installed:
- Run `Pkg.instantiate()` to install all recorded dependencies.
Stacktrace:
[1] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1306
[2] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[3] macro expansion
@ .\loading.jl:1180 [inlined]
[4] macro expansion
@ .\lock.jl:223 [inlined]
[5] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[6] eval
@ .\boot.jl:368 [inlined]
[7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[8] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[9] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
[10] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[11] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[12] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67
[13] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
[14] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
[15] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:1
Backtrace:
▆
1. └─jlmerclusterperm::jlmerclusterperm_setup(...) at test-clusterpermute.R:3:1
2. └─jlmerclusterperm:::setup_with_progress(...)
3. ├─base::withCallingHandlers(...)
4. └─jlmerclusterperm:::source_jl(verbose = verbose)
5. └─JuliaConnectoR::juliaEval(jl_pkgs[i])
6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
7. ├─base::tryCatch(...)
8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
12. └─JuliaConnectoR:::handleCallbacksAndOutput()
[ FAIL 4 | WARN 0 | SKIP 7 | PASS 5 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.