CRAN Package Check Results for Package lisat

Last updated on 2026-10-24 05:51:19 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.2	47.93	576.71	624.64	OK
r-devel-linux-x86_64-debian-gcc	0.1.2	36.87	412.38	449.25	OK
r-devel-linux-x86_64-fedora-clang	0.1.2	39.00	407.12	446.12	OK
r-devel-linux-x86_64-fedora-gcc	0.1.2	36.00	400.48	436.48	OK
r-devel-windows-x86_64	0.1.2	51.00	498.00	549.00	OK
r-patched-linux-x86_64	0.1.2	47.56	555.17	602.73	OK
r-release-linux-x86_64	0.1.2	46.79	560.10	606.89	OK
r-release-macos-arm64	0.1.2	14.00	146.00	160.00	OK
r-release-macos-x86_64	0.1.2	34.00	562.00	596.00	OK
r-release-windows-x86_64	0.1.2	48.00	473.00	521.00	OK
r-oldrel-macos-arm64	0.1.2	20.00	139.00	159.00	ERROR
r-oldrel-macos-x86_64	0.1.2	33.00	613.00	646.00	ERROR
r-oldrel-windows-x86_64	0.1.2	69.00	668.00	737.00	OK

Check Details

Version: 0.1.2
Check: tests
Result: ERROR Running ‘testthat.R’ [5s/6s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(lisat) > testthat::test_check("lisat") Saving _problems/test-functions-71.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ──────── Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it. Backtrace: ▆ 1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-arm64

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘lisat-intro.Rmd’ using rmarkdown Quitting from lisat-intro.Rmd:107-111 [cis_analysis] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.frame`: ! undefined columns selected --- Backtrace: ▆ 1. └─lisat::CIS(IS_raw = IS_raw, connect_distance = 50000) 2. ├─IS_raw[, c("Locus", "Chr", "nearest_gene_name")] 3. └─base::`[.data.frame`(IS_raw, , c("Locus", "Chr", "nearest_gene_name")) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'lisat-intro.Rmd' failed with diagnostics: undefined columns selected --- failed re-building ‘lisat-intro.Rmd’ SUMMARY: processing the following file failed: ‘lisat-intro.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.1.2
Check: tests
Result: ERROR Running ‘testthat.R’ [11s/25s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(lisat) > testthat::test_check("lisat") Saving _problems/test-functions-71.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ──────── Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it. Backtrace: ▆ 1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-x86_64