CRAN Package Check Results for Package matrixTests

Last updated on 2025-02-16 08:50:52 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.2.3	4.40	157.25	161.65	OK
r-devel-linux-x86_64-debian-gcc	0.2.3	2.91	103.72	106.63	OK
r-devel-linux-x86_64-fedora-clang	0.2.3			269.79	OK
r-devel-linux-x86_64-fedora-gcc	0.2.3			252.65	OK
r-devel-macos-arm64	0.2.3			64.00	OK
r-devel-macos-x86_64	0.2.3			68.00	ERROR
r-devel-windows-x86_64	0.2.3	6.00	160.00	166.00	OK
r-patched-linux-x86_64	0.2.3	4.85	150.26	155.11	OK
r-release-linux-x86_64	0.2.3	4.17	149.60	153.77	OK
r-release-macos-arm64	0.2.3			65.00	OK
r-release-macos-x86_64	0.2.3			144.00	OK
r-release-windows-x86_64	0.2.3	5.00	162.00	167.00	OK
r-oldrel-macos-arm64	0.2.3			78.00	OK
r-oldrel-macos-x86_64	0.2.3			244.00	OK
r-oldrel-windows-x86_64	0.2.3	7.00	236.00	243.00	OK

Check Details

Version: 0.2.3
Check: tests
Result: ERROR Running ‘andersondarling_behaviour.r’ [0s/0s] Running ‘andersondarling_correctness.r’ [1s/1s] Running ‘andersondarling_errors.r’ [0s/0s] Running ‘andersondarling_warnings.r’ [0s/0s] Running ‘bartlett_behaviour.r’ [0s/0s] Running ‘bartlett_correctness.r’ [2s/4s] Running ‘bartlett_errors.r’ [0s/0s] Running ‘bartlett_warnings.r’ [0s/0s] Running ‘brownforsythe_behaviour.r’ [0s/0s] Running ‘brownforsythe_correctness.r’ [7s/13s] Running ‘brownforsythe_errors.r’ [0s/0s] Running ‘brownforsythe_warnings.r’ [0s/0s] Running ‘cor_pearson_behaviour.r’ [0s/0s] Running ‘cor_pearson_correctness.r’ [1s/1s] Running ‘cor_pearson_errors.r’ [0s/0s] Running ‘cor_pearson_warnings.r’ [0s/0s] Running ‘cosinor_behaviour.r’ [0s/0s] Running ‘cosinor_correctness.r’ [1s/2s] Running the tests in ‘tests/cosinor_correctness.r’ failed. Complete output: > library(matrixTests) > > #--- functions ----------------------------------------------------------------- > > cosinor_cosinor <- function(mat, time, per) { + stopifnot(ncol(mat) == length(time)) + if(is.vector(mat)) mat <- matrix(mat, nrow=1) + n <- m <- amp <- acr <- dfm <- dfr <- rsq <- f <- p <- numeric(nrow(mat)) + + for(i in 1:nrow(mat)) { + dat <- data.frame(x=mat[i,], t=time) + dat <- dat[!is.na(dat$x) & !is.na(dat$t),] + res <- cosinor::cosinor.lm(x ~ time(t), data=dat, period=per) + + n[i] <- nrow(dat) + m[i] <- res$coefficients[1] + amp[i] <- res$coefficients[2] + acr[i] <- abs(cosinor2::correct.acrophase(res) / pi * (per/2)) + dfm[i] <- cosinor2::cosinor.detect(res)[2] + dfr[i] <- cosinor2::cosinor.detect(res)[3] + rsq[i] <- cosinor2::cosinor.PR(res)[[2]] + f[i] <- cosinor2::cosinor.detect(res)[1] + p[i] <- cosinor2::cosinor.detect(res)[4] + } + + data.frame(obs=n, mesor=m, amplitude=amp, acrophase=acr, rsquared=rsq, + df.model=dfm, df.residual=dfr, statistic=f, + pvalue=p, period=per + ) + } > > > #--- montecarlo ---------------------------------------------------------------- > > # equally spaced 10 time points, period = 10 > X <- matrix(rnorm(10000), ncol=10) > t <- -5:4 > res1 <- cosinor_cosinor(X, t, 10) Error in loadNamespace(x) : there is no package called 'cosinor2' Calls: cosinor_cosinor ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted Flavor: r-devel-macos-x86_64