CRAN Package Check Results for Maintainer ‘Xuefei Mi <mi_xue_fei at hotmail.com>’

Last updated on 2024-11-24 15:49:54 CET.

Package	NOTE	OK
selectiongain	10	3

Package selectiongain

Current CRAN status: NOTE: 10, OK: 3

Version: 2.0.710
Check: Rd files
Result: NOTE checkRd: (-1) SDselectiongain.Rd:25: Lost braces; missing escapes or markup? 25 | is the vector of variance components of genetic effect, genotype \eqn{\times} location interaction, genotype \eqn{\times} year interaction, genotype \eqn{\times} location \eqn{\times} year interaction and the plot error. When \code{VSCA} is specified, the VGCAandE refers to the general combining ability, otherwise it stands for genetic effect. The default value is {1,1,1,1,1}. Variances types listed in Longin et al. (2007) can be used. For example, \code{VGCAandE="VC2"} will set the value as {1,0.5,0.5,1,2}.} | ^ checkRd: (-1) SDselectiongain.Rd:25: Lost braces; missing escapes or markup? 25 | is the vector of variance components of genetic effect, genotype \eqn{\times} location interaction, genotype \eqn{\times} year interaction, genotype \eqn{\times} location \eqn{\times} year interaction and the plot error. When \code{VSCA} is specified, the VGCAandE refers to the general combining ability, otherwise it stands for genetic effect. The default value is {1,1,1,1,1}. Variances types listed in Longin et al. (2007) can be used. For example, \code{VGCAandE="VC2"} will set the value as {1,0.5,0.5,1,2}.} | ^ checkRd: (-1) SDselectiongain.Rd:28: Lost braces; missing escapes or markup? 28 | is the vector of variance components for specific combining ability. The default value is {0,0,0,0}. } | ^ checkRd: (-1) SDselectiongain.Rd:31: Lost braces; missing escapes or markup? 31 | is the vector of variance components for line per se. The default value is {0,0,0,0,0}.} | ^ checkRd: (-1) multistagecor.Rd:23: Lost braces; missing escapes or markup? 23 | \item{VGCAandE}{is the vector of variance components of genetic effect, genotype \eqn{\times} location interaction, genotype \eqn{\times} year interaction, genotype \eqn{\times} location \eqn{\times} year interaction and the plot error. When \code{VSCA} is specified, the VGCAandE refers to the general combining ability (hybrid breeding), otherwise it stands for genetic effect (line breeding). The default value is {1,1,1,1,1}. Variances types listed in Longin et al. (2007) can be used. For example, \code{VGCAandE="VC2"} will set the value as {1,0.5,0.5,1,2}. } | ^ checkRd: (-1) multistagecor.Rd:23: Lost braces; missing escapes or markup? 23 | \item{VGCAandE}{is the vector of variance components of genetic effect, genotype \eqn{\times} location interaction, genotype \eqn{\times} year interaction, genotype \eqn{\times} location \eqn{\times} year interaction and the plot error. When \code{VSCA} is specified, the VGCAandE refers to the general combining ability (hybrid breeding), otherwise it stands for genetic effect (line breeding). The default value is {1,1,1,1,1}. Variances types listed in Longin et al. (2007) can be used. For example, \code{VGCAandE="VC2"} will set the value as {1,0.5,0.5,1,2}. } | ^ checkRd: (-1) multistagecor.Rd:25: Lost braces; missing escapes or markup? 25 | \item{VSCA}{is the vector of variance components for specific combining ability (hybrid breeding). The default value is {0,0,0,0}. } | ^ checkRd: (-1) multistagecor.Rd:27: Lost braces; missing escapes or markup? 27 | \item{VLine}{Only to be used if parental and testcross selection are performed in a breeding strategy, For an example see the paper "Wegenast, Longin... 2008. Hybrid maize breeding with doubled haploids. IV". If this strategy is implemented, then Vline correspond to the vector of variance components for the parents (line per se). The default value is {0,0,0,0,0}.} | ^ checkRd: (-1) multistagecor.Rd:49: Lost braces; missing escapes or markup? 49 | \item{VGCAandE2}{In the case of simultaneos selection of two traits (index selection) it is the vector of variance components of genetic effect, genotype \eqn{\times} location interaction, genotype \eqn{\times} year interaction, genotype \eqn{\times} location \eqn{\times} year interaction and the plot error for the second trait. When \code{VSCA2} is specified, the VGCAandE refers to the general combining ability, otherwise it stands for genetic effect of the second trait. The default value is {0,0,0,0,0}, meaning no simultaneos selection of two traits.} | ^ checkRd: (-1) multistagecor.Rd:51: Lost braces; missing escapes or markup? 51 | \item{VSCA2}{In the case of simultaneos selection of two traits (index selection) it is the vector of variance components for specific combining ability for the second trait. The default value is {0,0,0,0}. The default value is {0,0,0,0} } | ^ checkRd: (-1) multistagecor.Rd:51: Lost braces; missing escapes or markup? 51 | \item{VSCA2}{In the case of simultaneos selection of two traits (index selection) it is the vector of variance components for specific combining ability for the second trait. The default value is {0,0,0,0}. The default value is {0,0,0,0} } | ^ checkRd: (-1) multistageoptimum.grid.Rd:49: Lost braces; missing escapes or markup? 49 | \item{cost.nursery}{a vector of length two c([cost of producing a DH line],[cost of testing a DH in nursery]). The default value is {0,0}. } | ^ checkRd: (-1) multistageoptimum.search.Rd:21: Lost braces; missing escapes or markup? 21 | \item{VGCAandE}{is the vector of variance components of genetic effect, genotype \eqn{\times} location interaction, genotype \eqn{\times} year interaction, genotype \eqn{\times} location \eqn{\times} year interaction and the plot error. When \code{VSCA} is specified, it refers to the general combining ability, otherwise it stands for genetic effect. The default value is {1,1,1,1,1}. Variances types listed in Longin et al. (2007) can be used. E.g., \code{VGCAandE="VC2"} will set the value as {1,0.5,0.5,1,2}. } | ^ checkRd: (-1) multistageoptimum.search.Rd:21: Lost braces; missing escapes or markup? 21 | \item{VGCAandE}{is the vector of variance components of genetic effect, genotype \eqn{\times} location interaction, genotype \eqn{\times} year interaction, genotype \eqn{\times} location \eqn{\times} year interaction and the plot error. When \code{VSCA} is specified, it refers to the general combining ability, otherwise it stands for genetic effect. The default value is {1,1,1,1,1}. Variances types listed in Longin et al. (2007) can be used. E.g., \code{VGCAandE="VC2"} will set the value as {1,0.5,0.5,1,2}. } | ^ checkRd: (-1) multistageoptimum.search.Rd:60: Lost braces; missing escapes or markup? 60 | \item{cost.nursery}{a vector of length two c([cost of producing a DH line],[cost of testing a DH in nursery]). The default value is {0,0}. } | ^ checkRd: (-1) multistageoptimum.searchIndexT.Rd:21: Lost braces; missing escapes or markup? 21 | \item{VGCAandE}{is the vector of variance components of genetic effect, genotype \eqn{\times} location interaction, genotype \eqn{\times} year interaction, genotype \eqn{\times} location \eqn{\times} year interaction and the plot error. When \code{VSCA} is specified, it refers to the general combining ability, otherwise it stands for genetic effect. The default value is {1,1,1,1,1}. Variances types listed in Longin et al. (2007) can be used. E.g., \code{VGCAandE="VC2"} will set the value as {1,0.5,0.5,1,2}. } | ^ checkRd: (-1) multistageoptimum.searchIndexT.Rd:21: Lost braces; missing escapes or markup? 21 | \item{VGCAandE}{is the vector of variance components of genetic effect, genotype \eqn{\times} location interaction, genotype \eqn{\times} year interaction, genotype \eqn{\times} location \eqn{\times} year interaction and the plot error. When \code{VSCA} is specified, it refers to the general combining ability, otherwise it stands for genetic effect. The default value is {1,1,1,1,1}. Variances types listed in Longin et al. (2007) can be used. E.g., \code{VGCAandE="VC2"} will set the value as {1,0.5,0.5,1,2}. } | ^ checkRd: (-1) multistageoptimum.searchIndexT.Rd:60: Lost braces; missing escapes or markup? 60 | \item{cost.nursery}{a vector of length two c([cost of producing a DH line],[cost of testing a DH in nursery]). The default value is {0,0}. } | ^ checkRd: (-1) multistageoptimum.searchIndexT.Rd:70: Lost braces; missing escapes or markup? 70 | \item{VGCAandE2}{In the case of simultaneos selection of two traits (index selection) it is the vector of variance components of genetic effect, genotype \eqn{\times} location interaction, genotype \eqn{\times} year interaction, genotype \eqn{\times} location \eqn{\times} year interaction and the plot error for the second trait. When \code{VSCA2} is specified, the VGCAandE refers to the general combining ability, otherwise it stands for genetic effect of the second trait. The default value is {0,0,0,0,0}, meaning no simultaneos selection of two traits.} | ^ checkRd: (-1) multistageoptimum.searchIndexT.Rd:72: Lost braces; missing escapes or markup? 72 | \item{VSCA2}{In the case of simultaneos selection of two traits (index selection) it is the vector of variance components for specific combining ability for the second trait. The default value is {0,0,0,0}. } | ^ checkRd: (-1) multistageoptimum.searchThreeS.Rd:22: Lost braces; missing escapes or markup? 22 | \item{VGCAandE}{is the vector of variance components of genetic effect, genotype \eqn{\times} location interaction, genotype \eqn{\times} year interaction, genotype \eqn{\times} location \eqn{\times} year interaction and the plot error. When \code{VSCA} is specified, it refers to the general combining ability, otherwise it stands for genetic effect. The default value is {1,1,1,1,1}. Variances types listed in Longin et al. (2007) can be used. E.g., \code{VGCAandE="VC2"} will set the value as {1,0.5,0.5,1,2}. } | ^ checkRd: (-1) multistageoptimum.searchThreeS.Rd:22: Lost braces; missing escapes or markup? 22 | \item{VGCAandE}{is the vector of variance components of genetic effect, genotype \eqn{\times} location interaction, genotype \eqn{\times} year interaction, genotype \eqn{\times} location \eqn{\times} year interaction and the plot error. When \code{VSCA} is specified, it refers to the general combining ability, otherwise it stands for genetic effect. The default value is {1,1,1,1,1}. Variances types listed in Longin et al. (2007) can be used. E.g., \code{VGCAandE="VC2"} will set the value as {1,0.5,0.5,1,2}. } | ^ checkRd: (-1) multistageoptimum.searchThreeS.Rd:69: Lost braces; missing escapes or markup? 69 | \item{cost.nursery}{a vector of length two c([cost of producing a DH line],[cost of testing a DH in nursery]). The default value is {0,0}. } | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64