CRAN Package Check Results for Package mispitools

Last updated on 2026-08-26 12:52:24 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.4.0	15.58	150.78	166.36	OK
r-devel-linux-x86_64-debian-gcc	1.4.0	9.71	110.33	120.04	OK
r-devel-linux-x86_64-fedora-clang	1.4.0	11.00	103.06	114.06	OK
r-devel-linux-x86_64-fedora-gcc	2.0.0	58.00	172.18	230.18	OK
r-devel-windows-x86_64	1.4.0	18.00	173.00	191.00	OK
r-patched-linux-x86_64	1.4.0	15.71	145.61	161.32	OK
r-release-linux-x86_64	1.4.0	14.31	144.30	158.61	OK
r-release-macos-arm64	2.0.0	15.00	56.00	71.00	ERROR
r-release-macos-x86_64	2.0.0	43.00	229.00	272.00	OK
r-release-windows-x86_64	1.4.0	18.00	162.00	180.00	OK
r-oldrel-macos-arm64	2.0.0	12.00	56.00	68.00	ERROR
r-oldrel-macos-x86_64	2.0.0	44.00	335.00	379.00	OK
r-oldrel-windows-x86_64	2.0.0	83.00	331.00	414.00	OK

Additional issues

linux-arm64 M1mac

Check Details

Version: 2.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [15s/16s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(mispitools) > > test_check("mispitools") <lr_dist> 3 atoms; E[log10 LR | H1] = 1.1 log10_lr p_h1 p_h2 -1 0.1 0.6 0 0.3 0.3 2 0.6 0.1 Saving _problems/test-lr-distribution-85.R Saving _problems/test-lr-distribution-86.R Saving _problems/test-lr-distribution-87.R Saving _problems/test-lr-distribution-88.R Saving _problems/test-lr-distribution-87.R Saving _problems/test-lr-distribution-88.R Saving _problems/test-lr-distribution-85.R Saving _problems/test-lr-distribution-86.R Saving _problems/test-lr-distribution-87.R Saving _problems/test-lr-distribution-88.R Saving _problems/test-lr-distribution-103.R Saving _problems/test-lr-distribution-104.R Saving _problems/test-lr-distribution-105.R <marker_model> marker_id : M1 alleles : 3 (12, 13, 14) mutation : none linkage : none pedigree : 3 individuals <nongenetic_feature> type : sex (categorical) observed : F categories : 2 (F, M) reference : marginal error : eps=0.05 Saving _problems/test-per-marker-lr-dist-cpp-141.R Saving _problems/test-per-marker-lr-dist-cpp-141.R Saving _problems/test-per-marker-lr-dist-cpp-151.R Saving _problems/test-per-marker-lr-dist-cpp-151.R Saving _problems/test-per-marker-lr-dist-cpp-151.R Saving _problems/test-per-marker-lr-dist-cpp-151.R Saving _problems/test-per-marker-lr-dist-cpp-174.R Saving _problems/test-per-marker-lr-dist-cpp-174.R Saving _problems/test-per-marker-lr-dist-cpp-174.R Saving _problems/test-per-marker-lr-dist-cpp-174.R [ FAIL 23 | WARN 0 | SKIP 23 | PASS 2446 ] ══ Skipped tests (23) ══════════════════════════════════════════════════════════ • On CRAN (20): 'test-core-modules.R:50:3', 'test-core-modules.R:68:3', 'test-fragility-tools.R:63:3', 'test-vs-pedprobr-cpp.R:108:11', 'test-vs-pedprobr-cpp.R:108:11', 'test-vs-pedprobr-cpp.R:108:11', 'test-vs-pedprobr-cpp.R:108:11', 'test-vs-pedprobr-cpp.R:108:11', 'test-vs-pedprobr-cpp.R:108:11', 'test-vs-pedprobr-linked-mut.R:176:3', 'test-vs-pedprobr-linked-mut.R:248:3', 'test-vs-pedprobr.R:78:9', 'test-vs-pedprobr.R:78:9', 'test-vs-pedprobr.R:78:9', 'test-vs-pedprobr.R:78:9', 'test-vs-pedprobr.R:78:9', 'test-vs-pedprobr.R:78:9', 'test-vs-pedprobr.R:78:9', 'test-vs-pedprobr.R:78:9', 'test-vs-pedprobr.R:78:9' • package built without OpenMP (SHLIB_OPENMP_CXXFLAGS empty) (1): 'test-openmp.R:32:5' • {forensIT} is not installed (2): 'test-vs-forensit-public.R:335:3', 'test-vs-forensit.R:232:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-lr-distribution.R:85:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `nrow(d)` to equal `nrow(ref)`. Differences: 1/1 mismatches [1] 7257 - 7138 == 119 ── Failure ('test-lr-distribution.R:86:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `d$log10_lr` to equal `ref$log10_lr`. Differences: Lengths differ: 7257 is not 7138 ── Failure ('test-lr-distribution.R:87:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `d$p_h1` to equal `ref$p_h1`. Differences: Lengths differ: 7257 is not 7138 ── Failure ('test-lr-distribution.R:88:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `d$p_h2` to equal `ref$p_h2`. Differences: Lengths differ: 7257 is not 7138 ── Failure ('test-lr-distribution.R:87:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `d$p_h1` to equal `ref$p_h1`. Differences: 13427/36300 mismatches (average diff: 5.28e-06) [1484] 3.22e-11 - 3.07e-11 == 1.49e-12 [1485] 4.51e-12 - 5.86e-12 == -1.35e-12 [1498] 2.71e-12 - 6.11e-12 == -3.39e-12 [1500] 2.34e-11 - 1.99e-11 == 3.43e-12 [1508] 2.47e-11 - 2.34e-11 == 1.23e-12 [1510] 1.88e-12 - 3.52e-12 == -1.64e-12 [1525] 1.57e-10 - 1.71e-10 == -1.35e-11 [1526] 2.83e-11 - 2.53e-11 == 2.97e-12 [1527] 5.33e-11 - 4.27e-11 == 1.06e-11 ... ── Failure ('test-lr-distribution.R:88:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `d$p_h2` to equal `ref$p_h2`. Differences: 15458/36300 mismatches (average diff: 3.81e-06) [20] 1.57e-05 - 1.57e-05 == 3.12e-08 [21] 3.01e-06 - 3.04e-06 == -3.12e-08 [25] 1.04e-05 - 1.04e-05 == 1.86e-10 [26] 2.24e-07 - 2.24e-07 == -1.86e-10 [33] 2.52e-05 - 2.56e-05 == -3.29e-07 [34] 1.77e-06 - 1.44e-06 == 3.29e-07 [39] 4.23e-06 - 4.34e-06 == -1.12e-07 [40] 4.89e-06 - 4.78e-06 == 1.12e-07 [42] 7.01e-07 - 7.25e-07 == -2.44e-08 ... ── Failure ('test-lr-distribution.R:85:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `nrow(d)` to equal `nrow(ref)`. Differences: 1/1 mismatches [1] 37203 - 37108 == 95 ── Failure ('test-lr-distribution.R:86:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `d$log10_lr` to equal `ref$log10_lr`. Differences: Lengths differ: 37203 is not 37108 ── Failure ('test-lr-distribution.R:87:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `d$p_h1` to equal `ref$p_h1`. Differences: Lengths differ: 37203 is not 37108 ── Failure ('test-lr-distribution.R:88:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `d$p_h2` to equal `ref$p_h2`. Differences: Lengths differ: 37203 is not 37108 ── Failure ('test-lr-distribution.R:103:3'): Argentina markers compose against the reference ── Expected `d$log10_lr` to equal `ref$log10_lr`. Differences: Lengths differ: 10651 is not 10429 ── Failure ('test-lr-distribution.R:104:3'): Argentina markers compose against the reference ── Expected `d$p_h1` to equal `ref$p_h1`. Differences: Lengths differ: 10651 is not 10429 ── Failure ('test-lr-distribution.R:105:3'): Argentina markers compose against the reference ── Expected `d$p_h2` to equal `ref$p_h2`. Differences: Lengths differ: 10651 is not 10429 ── Failure ('test-per-marker-lr-dist-cpp.R:141:3'): cpp_per_marker_lr_dist matches R-ref on halfSibPed K=3 mut=equal ── Expected `cpp$p_h1` to equal `ref$p_h1`. Differences: 18/100 mismatches (average diff: 0.000796) [14] 8.11e-05 - 9.33e-05 == -1.22e-05 [15] 2.78e-04 - 2.65e-04 == 1.22e-05 [18] 2.19e-04 - 2.07e-04 == 1.16e-05 [20] 1.16e-05 - 2.32e-05 == -1.16e-05 [26] 6.07e-04 - 6.22e-04 == -1.45e-05 [27] 1.08e-03 - 1.07e-03 == 1.45e-05 [31] 1.35e-03 - 1.34e-03 == 1.15e-05 [33] 2.00e-04 - 2.11e-04 == -1.15e-05 [41] 7.82e-04 - 7.96e-04 == -1.45e-05 ... halfSibPed K=3 mut=equal Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "halfSibPed K=3 mut=equal") at test-per-marker-lr-dist-cpp.R:141:3 2. └─testthat::expect_equal(cpp$p_h1, ref$p_h1, tolerance = tol, info = info) at test-per-marker-lr-dist-cpp.R:28:3 ── Failure ('test-per-marker-lr-dist-cpp.R:141:3'): cpp_per_marker_lr_dist matches R-ref on halfSibPed K=3 mut=equal ── Expected `cpp$p_h2` to equal `ref$p_h2`. Differences: 18/100 mismatches (average diff: 0.000875) [14] 0.007749 - 0.00891 == -0.001166 [15] 0.026521 - 0.02535 == 0.001166 [18] 0.015661 - 0.01483 == 0.000829 [20] 0.000829 - 0.00166 == -0.000829 [26] 0.029303 - 0.03000 == -0.000700 [27] 0.052189 - 0.05149 == 0.000700 [31] 0.048956 - 0.04854 == 0.000415 [33] 0.007237 - 0.00765 == -0.000415 [41] 0.025234 - 0.02570 == -0.000467 ... halfSibPed K=3 mut=equal Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "halfSibPed K=3 mut=equal") at test-per-marker-lr-dist-cpp.R:141:3 2. └─testthat::expect_equal(cpp$p_h2, ref$p_h2, tolerance = tol, info = info) at test-per-marker-lr-dist-cpp.R:29:3 ── Failure ('test-per-marker-lr-dist-cpp.R:151:3'): cpp_per_marker_lr_dist matches R-ref on linearPed(2) mut=stepwise ── Expected `length(cpp$log10_lr)` to equal `nrow(ref)`. Differences: 1/1 mismatches [1] 188 - 186 == 2 linearPed(2) K=3 mut=stepwise Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "linearPed(2) K=3 mut=stepwise") at test-per-marker-lr-dist-cpp.R:151:3 2. └─testthat::expect_equal(length(cpp$log10_lr), nrow(ref), info = info) at test-per-marker-lr-dist-cpp.R:26:3 ── Failure ('test-per-marker-lr-dist-cpp.R:151:3'): cpp_per_marker_lr_dist matches R-ref on linearPed(2) mut=stepwise ── Expected `cpp$log10_lr` to equal `ref$log10_lr`. Differences: Lengths differ: 188 is not 186 linearPed(2) K=3 mut=stepwise Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "linearPed(2) K=3 mut=stepwise") at test-per-marker-lr-dist-cpp.R:151:3 2. └─testthat::expect_equal(...) at test-per-marker-lr-dist-cpp.R:27:3 ── Failure ('test-per-marker-lr-dist-cpp.R:151:3'): cpp_per_marker_lr_dist matches R-ref on linearPed(2) mut=stepwise ── Expected `cpp$p_h1` to equal `ref$p_h1`. Differences: Lengths differ: 188 is not 186 linearPed(2) K=3 mut=stepwise Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "linearPed(2) K=3 mut=stepwise") at test-per-marker-lr-dist-cpp.R:151:3 2. └─testthat::expect_equal(cpp$p_h1, ref$p_h1, tolerance = tol, info = info) at test-per-marker-lr-dist-cpp.R:28:3 ── Failure ('test-per-marker-lr-dist-cpp.R:151:3'): cpp_per_marker_lr_dist matches R-ref on linearPed(2) mut=stepwise ── Expected `cpp$p_h2` to equal `ref$p_h2`. Differences: Lengths differ: 188 is not 186 linearPed(2) K=3 mut=stepwise Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "linearPed(2) K=3 mut=stepwise") at test-per-marker-lr-dist-cpp.R:151:3 2. └─testthat::expect_equal(cpp$p_h2, ref$p_h2, tolerance = tol, info = info) at test-per-marker-lr-dist-cpp.R:29:3 ── Failure ('test-per-marker-lr-dist-cpp.R:174:3'): cpp_per_marker_lr_dist matches R-ref on trio K=4 mut=stepwise ── Expected `length(cpp$log10_lr)` to equal `nrow(ref)`. Differences: 1/1 mismatches [1] 523 - 519 == 4 trio K=4 mut=stepwise Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "trio K=4 mut=stepwise") at test-per-marker-lr-dist-cpp.R:174:3 2. └─testthat::expect_equal(length(cpp$log10_lr), nrow(ref), info = info) at test-per-marker-lr-dist-cpp.R:26:3 ── Failure ('test-per-marker-lr-dist-cpp.R:174:3'): cpp_per_marker_lr_dist matches R-ref on trio K=4 mut=stepwise ── Expected `cpp$log10_lr` to equal `ref$log10_lr`. Differences: Lengths differ: 523 is not 519 trio K=4 mut=stepwise Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "trio K=4 mut=stepwise") at test-per-marker-lr-dist-cpp.R:174:3 2. └─testthat::expect_equal(...) at test-per-marker-lr-dist-cpp.R:27:3 ── Failure ('test-per-marker-lr-dist-cpp.R:174:3'): cpp_per_marker_lr_dist matches R-ref on trio K=4 mut=stepwise ── Expected `cpp$p_h1` to equal `ref$p_h1`. Differences: Lengths differ: 523 is not 519 trio K=4 mut=stepwise Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "trio K=4 mut=stepwise") at test-per-marker-lr-dist-cpp.R:174:3 2. └─testthat::expect_equal(cpp$p_h1, ref$p_h1, tolerance = tol, info = info) at test-per-marker-lr-dist-cpp.R:28:3 ── Failure ('test-per-marker-lr-dist-cpp.R:174:3'): cpp_per_marker_lr_dist matches R-ref on trio K=4 mut=stepwise ── Expected `cpp$p_h2` to equal `ref$p_h2`. Differences: Lengths differ: 523 is not 519 trio K=4 mut=stepwise Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "trio K=4 mut=stepwise") at test-per-marker-lr-dist-cpp.R:174:3 2. └─testthat::expect_equal(cpp$p_h2, ref$p_h2, tolerance = tol, info = info) at test-per-marker-lr-dist-cpp.R:29:3 [ FAIL 23 | WARN 0 | SKIP 23 | PASS 2446 ] Error: ! Test failures. Execution halted Flavor: r-release-macos-arm64

Version: 2.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [14s/15s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(mispitools) > > test_check("mispitools") <lr_dist> 3 atoms; E[log10 LR | H1] = 1.1 log10_lr p_h1 p_h2 -1 0.1 0.6 0 0.3 0.3 2 0.6 0.1 Saving _problems/test-lr-distribution-85.R Saving _problems/test-lr-distribution-86.R Saving _problems/test-lr-distribution-87.R Saving _problems/test-lr-distribution-88.R Saving _problems/test-lr-distribution-87.R Saving _problems/test-lr-distribution-88.R Saving _problems/test-lr-distribution-85.R Saving _problems/test-lr-distribution-86.R Saving _problems/test-lr-distribution-87.R Saving _problems/test-lr-distribution-88.R Saving _problems/test-lr-distribution-103.R Saving _problems/test-lr-distribution-104.R Saving _problems/test-lr-distribution-105.R <marker_model> marker_id : M1 alleles : 3 (12, 13, 14) mutation : none linkage : none pedigree : 3 individuals <nongenetic_feature> type : sex (categorical) observed : F categories : 2 (F, M) reference : marginal error : eps=0.05 Saving _problems/test-per-marker-lr-dist-cpp-141.R Saving _problems/test-per-marker-lr-dist-cpp-141.R Saving _problems/test-per-marker-lr-dist-cpp-151.R Saving _problems/test-per-marker-lr-dist-cpp-151.R Saving _problems/test-per-marker-lr-dist-cpp-151.R Saving _problems/test-per-marker-lr-dist-cpp-151.R Saving _problems/test-per-marker-lr-dist-cpp-174.R Saving _problems/test-per-marker-lr-dist-cpp-174.R Saving _problems/test-per-marker-lr-dist-cpp-174.R Saving _problems/test-per-marker-lr-dist-cpp-174.R [ FAIL 23 | WARN 0 | SKIP 23 | PASS 2446 ] ══ Skipped tests (23) ══════════════════════════════════════════════════════════ • On CRAN (20): 'test-core-modules.R:50:3', 'test-core-modules.R:68:3', 'test-fragility-tools.R:63:3', 'test-vs-pedprobr-cpp.R:108:11', 'test-vs-pedprobr-cpp.R:108:11', 'test-vs-pedprobr-cpp.R:108:11', 'test-vs-pedprobr-cpp.R:108:11', 'test-vs-pedprobr-cpp.R:108:11', 'test-vs-pedprobr-cpp.R:108:11', 'test-vs-pedprobr-linked-mut.R:176:3', 'test-vs-pedprobr-linked-mut.R:248:3', 'test-vs-pedprobr.R:78:9', 'test-vs-pedprobr.R:78:9', 'test-vs-pedprobr.R:78:9', 'test-vs-pedprobr.R:78:9', 'test-vs-pedprobr.R:78:9', 'test-vs-pedprobr.R:78:9', 'test-vs-pedprobr.R:78:9', 'test-vs-pedprobr.R:78:9', 'test-vs-pedprobr.R:78:9' • package built without OpenMP (SHLIB_OPENMP_CXXFLAGS empty) (1): 'test-openmp.R:32:5' • {forensIT} is not installed (2): 'test-vs-forensit-public.R:335:3', 'test-vs-forensit.R:232:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-lr-distribution.R:85:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `nrow(d)` to equal `nrow(ref)`. Differences: 1/1 mismatches [1] 7257 - 7138 == 119 ── Failure ('test-lr-distribution.R:86:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `d$log10_lr` to equal `ref$log10_lr`. Differences: Lengths differ: 7257 is not 7138 ── Failure ('test-lr-distribution.R:87:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `d$p_h1` to equal `ref$p_h1`. Differences: Lengths differ: 7257 is not 7138 ── Failure ('test-lr-distribution.R:88:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `d$p_h2` to equal `ref$p_h2`. Differences: Lengths differ: 7257 is not 7138 ── Failure ('test-lr-distribution.R:87:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `d$p_h1` to equal `ref$p_h1`. Differences: 13427/36300 mismatches (average diff: 5.28e-06) [1484] 3.22e-11 - 3.07e-11 == 1.49e-12 [1485] 4.51e-12 - 5.86e-12 == -1.35e-12 [1498] 2.71e-12 - 6.11e-12 == -3.39e-12 [1500] 2.34e-11 - 1.99e-11 == 3.43e-12 [1508] 2.47e-11 - 2.34e-11 == 1.23e-12 [1510] 1.88e-12 - 3.52e-12 == -1.64e-12 [1525] 1.57e-10 - 1.71e-10 == -1.35e-11 [1526] 2.83e-11 - 2.53e-11 == 2.97e-12 [1527] 5.33e-11 - 4.27e-11 == 1.06e-11 ... ── Failure ('test-lr-distribution.R:88:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `d$p_h2` to equal `ref$p_h2`. Differences: 15458/36300 mismatches (average diff: 3.81e-06) [20] 1.57e-05 - 1.57e-05 == 3.12e-08 [21] 3.01e-06 - 3.04e-06 == -3.12e-08 [25] 1.04e-05 - 1.04e-05 == 1.86e-10 [26] 2.24e-07 - 2.24e-07 == -1.86e-10 [33] 2.52e-05 - 2.56e-05 == -3.29e-07 [34] 1.77e-06 - 1.44e-06 == 3.29e-07 [39] 4.23e-06 - 4.34e-06 == -1.12e-07 [40] 4.89e-06 - 4.78e-06 == 1.12e-07 [42] 7.01e-07 - 7.25e-07 == -2.44e-08 ... ── Failure ('test-lr-distribution.R:85:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `nrow(d)` to equal `nrow(ref)`. Differences: 1/1 mismatches [1] 37203 - 37108 == 95 ── Failure ('test-lr-distribution.R:86:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `d$log10_lr` to equal `ref$log10_lr`. Differences: Lengths differ: 37203 is not 37108 ── Failure ('test-lr-distribution.R:87:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `d$p_h1` to equal `ref$p_h1`. Differences: Lengths differ: 37203 is not 37108 ── Failure ('test-lr-distribution.R:88:5'): multi-marker exact composition matches lr_dist_compose_R ── Expected `d$p_h2` to equal `ref$p_h2`. Differences: Lengths differ: 37203 is not 37108 ── Failure ('test-lr-distribution.R:103:3'): Argentina markers compose against the reference ── Expected `d$log10_lr` to equal `ref$log10_lr`. Differences: Lengths differ: 10651 is not 10429 ── Failure ('test-lr-distribution.R:104:3'): Argentina markers compose against the reference ── Expected `d$p_h1` to equal `ref$p_h1`. Differences: Lengths differ: 10651 is not 10429 ── Failure ('test-lr-distribution.R:105:3'): Argentina markers compose against the reference ── Expected `d$p_h2` to equal `ref$p_h2`. Differences: Lengths differ: 10651 is not 10429 ── Failure ('test-per-marker-lr-dist-cpp.R:141:3'): cpp_per_marker_lr_dist matches R-ref on halfSibPed K=3 mut=equal ── Expected `cpp$p_h1` to equal `ref$p_h1`. Differences: 18/100 mismatches (average diff: 0.000796) [14] 8.11e-05 - 9.33e-05 == -1.22e-05 [15] 2.78e-04 - 2.65e-04 == 1.22e-05 [18] 2.19e-04 - 2.07e-04 == 1.16e-05 [20] 1.16e-05 - 2.32e-05 == -1.16e-05 [26] 6.07e-04 - 6.22e-04 == -1.45e-05 [27] 1.08e-03 - 1.07e-03 == 1.45e-05 [31] 1.35e-03 - 1.34e-03 == 1.15e-05 [33] 2.00e-04 - 2.11e-04 == -1.15e-05 [41] 7.82e-04 - 7.96e-04 == -1.45e-05 ... halfSibPed K=3 mut=equal Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "halfSibPed K=3 mut=equal") at test-per-marker-lr-dist-cpp.R:141:3 2. └─testthat::expect_equal(cpp$p_h1, ref$p_h1, tolerance = tol, info = info) at test-per-marker-lr-dist-cpp.R:28:3 ── Failure ('test-per-marker-lr-dist-cpp.R:141:3'): cpp_per_marker_lr_dist matches R-ref on halfSibPed K=3 mut=equal ── Expected `cpp$p_h2` to equal `ref$p_h2`. Differences: 18/100 mismatches (average diff: 0.000875) [14] 0.007749 - 0.00891 == -0.001166 [15] 0.026521 - 0.02535 == 0.001166 [18] 0.015661 - 0.01483 == 0.000829 [20] 0.000829 - 0.00166 == -0.000829 [26] 0.029303 - 0.03000 == -0.000700 [27] 0.052189 - 0.05149 == 0.000700 [31] 0.048956 - 0.04854 == 0.000415 [33] 0.007237 - 0.00765 == -0.000415 [41] 0.025234 - 0.02570 == -0.000467 ... halfSibPed K=3 mut=equal Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "halfSibPed K=3 mut=equal") at test-per-marker-lr-dist-cpp.R:141:3 2. └─testthat::expect_equal(cpp$p_h2, ref$p_h2, tolerance = tol, info = info) at test-per-marker-lr-dist-cpp.R:29:3 ── Failure ('test-per-marker-lr-dist-cpp.R:151:3'): cpp_per_marker_lr_dist matches R-ref on linearPed(2) mut=stepwise ── Expected `length(cpp$log10_lr)` to equal `nrow(ref)`. Differences: 1/1 mismatches [1] 188 - 186 == 2 linearPed(2) K=3 mut=stepwise Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "linearPed(2) K=3 mut=stepwise") at test-per-marker-lr-dist-cpp.R:151:3 2. └─testthat::expect_equal(length(cpp$log10_lr), nrow(ref), info = info) at test-per-marker-lr-dist-cpp.R:26:3 ── Failure ('test-per-marker-lr-dist-cpp.R:151:3'): cpp_per_marker_lr_dist matches R-ref on linearPed(2) mut=stepwise ── Expected `cpp$log10_lr` to equal `ref$log10_lr`. Differences: Lengths differ: 188 is not 186 linearPed(2) K=3 mut=stepwise Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "linearPed(2) K=3 mut=stepwise") at test-per-marker-lr-dist-cpp.R:151:3 2. └─testthat::expect_equal(...) at test-per-marker-lr-dist-cpp.R:27:3 ── Failure ('test-per-marker-lr-dist-cpp.R:151:3'): cpp_per_marker_lr_dist matches R-ref on linearPed(2) mut=stepwise ── Expected `cpp$p_h1` to equal `ref$p_h1`. Differences: Lengths differ: 188 is not 186 linearPed(2) K=3 mut=stepwise Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "linearPed(2) K=3 mut=stepwise") at test-per-marker-lr-dist-cpp.R:151:3 2. └─testthat::expect_equal(cpp$p_h1, ref$p_h1, tolerance = tol, info = info) at test-per-marker-lr-dist-cpp.R:28:3 ── Failure ('test-per-marker-lr-dist-cpp.R:151:3'): cpp_per_marker_lr_dist matches R-ref on linearPed(2) mut=stepwise ── Expected `cpp$p_h2` to equal `ref$p_h2`. Differences: Lengths differ: 188 is not 186 linearPed(2) K=3 mut=stepwise Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "linearPed(2) K=3 mut=stepwise") at test-per-marker-lr-dist-cpp.R:151:3 2. └─testthat::expect_equal(cpp$p_h2, ref$p_h2, tolerance = tol, info = info) at test-per-marker-lr-dist-cpp.R:29:3 ── Failure ('test-per-marker-lr-dist-cpp.R:174:3'): cpp_per_marker_lr_dist matches R-ref on trio K=4 mut=stepwise ── Expected `length(cpp$log10_lr)` to equal `nrow(ref)`. Differences: 1/1 mismatches [1] 523 - 519 == 4 trio K=4 mut=stepwise Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "trio K=4 mut=stepwise") at test-per-marker-lr-dist-cpp.R:174:3 2. └─testthat::expect_equal(length(cpp$log10_lr), nrow(ref), info = info) at test-per-marker-lr-dist-cpp.R:26:3 ── Failure ('test-per-marker-lr-dist-cpp.R:174:3'): cpp_per_marker_lr_dist matches R-ref on trio K=4 mut=stepwise ── Expected `cpp$log10_lr` to equal `ref$log10_lr`. Differences: Lengths differ: 523 is not 519 trio K=4 mut=stepwise Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "trio K=4 mut=stepwise") at test-per-marker-lr-dist-cpp.R:174:3 2. └─testthat::expect_equal(...) at test-per-marker-lr-dist-cpp.R:27:3 ── Failure ('test-per-marker-lr-dist-cpp.R:174:3'): cpp_per_marker_lr_dist matches R-ref on trio K=4 mut=stepwise ── Expected `cpp$p_h1` to equal `ref$p_h1`. Differences: Lengths differ: 523 is not 519 trio K=4 mut=stepwise Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "trio K=4 mut=stepwise") at test-per-marker-lr-dist-cpp.R:174:3 2. └─testthat::expect_equal(cpp$p_h1, ref$p_h1, tolerance = tol, info = info) at test-per-marker-lr-dist-cpp.R:28:3 ── Failure ('test-per-marker-lr-dist-cpp.R:174:3'): cpp_per_marker_lr_dist matches R-ref on trio K=4 mut=stepwise ── Expected `cpp$p_h2` to equal `ref$p_h2`. Differences: Lengths differ: 523 is not 519 trio K=4 mut=stepwise Backtrace: ▆ 1. └─mispitools (local) expect_lrdist_equal(cpp, ref, info = "trio K=4 mut=stepwise") at test-per-marker-lr-dist-cpp.R:174:3 2. └─testthat::expect_equal(cpp$p_h2, ref$p_h2, tolerance = tol, info = info) at test-per-marker-lr-dist-cpp.R:29:3 [ FAIL 23 | WARN 0 | SKIP 23 | PASS 2446 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-arm64