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Last updated on 2026-08-06 05:49:41 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.14.5 | 9.97 | 125.38 | 135.35 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.14.5 | 7.08 | 103.33 | 110.41 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.14.5 | 95.75 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.14.5 | 8.00 | 92.57 | 100.57 | NOTE | |
| r-devel-windows-x86_64 | 1.14.5 | 13.00 | 131.00 | 144.00 | NOTE | |
| r-patched-linux-x86_64 | 1.14.5 | 11.19 | 121.60 | 132.79 | OK | |
| r-release-linux-x86_64 | 1.14.5 | 9.93 | 120.12 | 130.05 | OK | |
| r-release-macos-arm64 | 1.14.5 | 3.00 | 38.00 | 41.00 | OK | |
| r-release-macos-x86_64 | 1.14.5 | 7.00 | 155.00 | 162.00 | OK | |
| r-release-windows-x86_64 | 1.14.5 | 12.00 | 136.00 | 148.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.14.5 | 3.00 | 37.00 | 40.00 | OK | |
| r-oldrel-macos-x86_64 | 1.14.5 | 7.00 | 194.00 | 201.00 | OK | |
| r-oldrel-windows-x86_64 | 1.14.5 | 16.00 | 173.00 | 189.00 | OK |
Version: 1.14.5
Check: R code for possible problems
Result: NOTE
Found calls to structure() using deprecated special names:
netgwas/tests/testthat/test_cutoffs.R (.Dim: 2)
netgwas/tests/testthat/test_lower.upper.R (.Dim: 3, .Names: 1)
'.Dim' should be changed to 'dim'.
'.Names' should be changed to 'names'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 1.14.5
Check: tests
Result: ERROR
Running 'testthat.R' [19s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(netgwas)
Registered S3 method overwritten by 'netgwas':
method from
plot.select huge
>
> test_check("netgwas")
Constructing linkage map is in progress ...
Constructing linkage map is done.
Constructing linkage map is in progress ...
Constructing linkage map is done.
Constructing linkage map is in progress:100%
Constructing linkage map is done.
Constructing linkage map is in progress:100%
Constructing linkage map is done.
Reconstructing genotype-phenotypes networks is in progress ...
Reconstructing genotype-phenotype networks done.
Reconstructing genotype-phenotypes networks is in progress ... :100%
Reconstructing genotype-phenotypes networks done.
Reconstructing intra- and inter- chromosomal interactions network is in progress ...
Reconstructing intra- and inter- chromosomal interactions network done.
Reconstructing intra- and inter- chromosomal interactions network is in progress:100%
Reconstructing intra- and inter- chromosomal interactions network done.
Reconstructing intra- and inter- chromosomal interactions network is in progress:100%
Reconstructing intra- and inter- chromosomal interactions network done.
Reconstructing intra- and inter- chromosomal interactions network is in progress ...
Reconstructing intra- and inter- chromosomal interactions network done.
Calculating extended Bayesian information criterion (ebic) selection ...done.
Saving _problems/test_selectnet-9.R
[ FAIL 1 | WARN 122 | SKIP 0 | PASS 11 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_selectnet.R:9:13'): Model selection works fine ──────────────
Expected `sel.ebic` to equal 4.
Differences:
1/1 mismatches
[1] 3 - 4 == -1
[ FAIL 1 | WARN 122 | SKIP 0 | PASS 11 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
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