CRAN Package Check Results for Package orthGS

Last updated on 2024-11-21 19:52:43 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.5	11.48	118.77	130.25	OK
r-devel-linux-x86_64-debian-gcc	0.1.5	9.07	87.15	96.22	OK
r-devel-linux-x86_64-fedora-clang	0.1.5			211.34	ERROR
r-devel-linux-x86_64-fedora-gcc	0.1.5			207.41	ERROR
r-devel-windows-x86_64	0.1.5	13.00	126.00	139.00	OK
r-patched-linux-x86_64	0.1.5	11.08	114.35	125.43	OK
r-release-linux-x86_64	0.1.5	11.42	113.56	124.98	OK
r-release-macos-arm64	0.1.5			68.00	OK
r-release-macos-x86_64	0.1.5			124.00	OK
r-release-windows-x86_64	0.1.5	15.00	124.00	139.00	OK
r-oldrel-macos-arm64	0.1.5			79.00	OK
r-oldrel-macos-x86_64	0.1.5			133.00	OK
r-oldrel-windows-x86_64	0.1.5	17.00	158.00	175.00	OK

Additional issues

noSuggests

Check Details

Version: 0.1.5
Check: examples
Result: ERROR Running examples in ‘orthGS-Ex.R’ failed The error most likely occurred in: > ### Name: gapless_msa > ### Title: Remove Gaps in a MSA > ### Aliases: gapless_msa > > ### ** Examples > > gapless_msa(msa(sequences = c("APGW", "AGWC", "CWGA"),ids = c("a", "b", "c"))$ali) Error in msa(sequences = c("APGW", "AGWC", "CWGA"), ids = c("a", "b", : You must install the package muscle in order to use this function Calls: gapless_msa -> as.matrix -> msa Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.1.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Searching_for_Orthologous.Rmd’ using rmarkdown Quitting from lines 56-61 [unnamed-chunk-5] (Searching_for_Orthologous.Rmd) Error: processing vignette 'Searching_for_Orthologous.Rmd' failed with diagnostics: You must install the package muscle in order to use this function --- failed re-building ‘Searching_for_Orthologous.Rmd’ --- re-building ‘Unraveling_the_hiden_paralogous.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/orthGS.Rcheck/vign_test/orthGS/vignettes/Unraveling_the_hiden_paralogous_files/figure-html/unnamed-chunk-6-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19334 bytes Input file size = 19436 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15210 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15210 Output IDAT size = 15210 bytes (4124 bytes decrease) Output file size = 15288 bytes (4148 bytes = 21.34% decrease) --- finished re-building ‘Unraveling_the_hiden_paralogous.Rmd’ SUMMARY: processing the following file failed: ‘Searching_for_Orthologous.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Searching_for_Orthologous.Rmd’ using rmarkdown Quitting from lines 56-61 [unnamed-chunk-5] (Searching_for_Orthologous.Rmd) Error: processing vignette 'Searching_for_Orthologous.Rmd' failed with diagnostics: You must install the package muscle in order to use this function --- failed re-building ‘Searching_for_Orthologous.Rmd’ --- re-building ‘Unraveling_the_hiden_paralogous.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/orthGS.Rcheck/vign_test/orthGS/vignettes/Unraveling_the_hiden_paralogous_files/figure-html/unnamed-chunk-6-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19299 bytes Input file size = 19401 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15354 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15354 Output IDAT size = 15354 bytes (3945 bytes decrease) Output file size = 15432 bytes (3969 bytes = 20.46% decrease) --- finished re-building ‘Unraveling_the_hiden_paralogous.Rmd’ SUMMARY: processing the following file failed: ‘Searching_for_Orthologous.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc