CRAN Package Check Results for Maintainer ‘Paul C. Boutros <pboutros at mednet.ucla.edu>’

Last updated on 2024-12-31 09:49:46 CET.

Package	WARN	NOTE	OK
bedr		3	10
BoutrosLab.plotting.general			13
CancerEvolutionVisualization			13
ISOpureR	1	12
iSubGen	1		12
OmicsQC			13
OutSeekR			13
SeqKat		2	11
VennDiagram			13

Package bedr

Current CRAN status: NOTE: 3, OK: 10

Version: 1.0.7
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: bedr.plot.region.Rd: venn.diagram Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package BoutrosLab.plotting.general

Current CRAN status: OK: 13

Package CancerEvolutionVisualization

Current CRAN status: OK: 13

Package ISOpureR

Current CRAN status: WARN: 1, NOTE: 12

Version: 1.1.3
Check: Rd files
Result: NOTE checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:9: Escaped LaTeX specials: \$ checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:14: Escaped LaTeX specials: \$ checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_loglikelihood.Rd:11: Escaped LaTeX specials: \$ checkRd: (-1) ISOpureS2.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:11: Escaped LaTeX specials: \$ checkRd: (-1) ISOpureS2.model_optimize.kappa.kappa_loglikelihood.Rd:11: Escaped LaTeX specials: \$ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.1.3
Check: re-building of vignette outputs
Result: WARN Error(s) in re-building vignettes: ... --- re-building ‘ISOpureRGuide.Rnw’ using knitr_notangle Error: processing vignette 'ISOpureRGuide.Rnw' failed with diagnostics: Running 'texi2dvi' on 'ISOpureRGuide.tex' failed. LaTeX errors: ! Undefined control sequence. l.300 \hlkwd{library}\hldef {(}\hlsng{"affy"}\hldef{);} ? ! Emergency stop. ! Emergency stop. l.300 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘ISOpureRGuide.Rnw’ SUMMARY: processing the following file failed: ‘ISOpureRGuide.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64

Package iSubGen

Current CRAN status: WARN: 1, OK: 12

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN Error(s) in re-building vignettes: ... --- re-building ‘iSubGenGuide.Rnw’ using knitr_notangle Error: processing vignette 'iSubGenGuide.Rnw' failed with diagnostics: Running 'texi2dvi' on 'iSubGenGuide.tex' failed. LaTeX errors: ! Undefined control sequence. l.128 \hlkwd{library}\hldef {(iSubGen);} ? ! Emergency stop. ! Emergency stop. l.128 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘iSubGenGuide.Rnw’ SUMMARY: processing the following file failed: ‘iSubGenGuide.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64

Package OmicsQC

Current CRAN status: OK: 13

Package OutSeekR

Current CRAN status: OK: 13

Package SeqKat

Current CRAN status: NOTE: 2, OK: 11

Version: 0.0.8
Check: package dependencies
Result: NOTE Package suggested but not available for checking: 'doMC' Flavors: r-release-windows-x86_64, r-oldrel-windows-x86_64

Package VennDiagram

Current CRAN status: OK: 13