Last updated on 2025-01-30 16:48:31 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.21 | 5.11 | 52.22 | 57.33 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.21 | 3.55 | 36.25 | 39.80 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.21 | 91.39 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.21 | 95.43 | OK | |||
| r-devel-windows-x86_64 | 1.0.21 | 6.00 | 78.00 | 84.00 | OK | |
| r-patched-linux-x86_64 | 1.0.21 | 3.99 | 47.84 | 51.83 | OK | |
| r-release-linux-x86_64 | 1.0.21 | 4.77 | 47.85 | 52.62 | OK | |
| r-release-macos-arm64 | 1.0.21 | 56.00 | OK | |||
| r-release-macos-x86_64 | 1.0.21 | 120.00 | OK | |||
| r-release-windows-x86_64 | 1.0.21 | 6.00 | 75.00 | 81.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.21 | 56.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.21 | 105.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.21 | 7.00 | 85.00 | 92.00 | OK |
Version: 1.0.21
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pmparser)
>
> test_check('pmparser')
[ FAIL 2 | WARN 0 | SKIP 4 | PASS 154 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test_get_citation.R:4:3', 'test_get_citation.R:13:3',
'test_get_pubmed_files.R:7:3', 'test_get_pubmed_files.R:20:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_modify_pubmed_db_std.R:42:3'): modifyPubmedDb update matches standard ──
Error in `getXmlInfo(xmlDir, xmlFiles, tableSuffix)`: all(file.exists(file.path(xmlDir, xmlInfo$xml_filename))) is not TRUE
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:42:3
2. └─pmparser:::parsePubmedXml(...)
3. └─pmparser:::getXmlInfo(xmlDir, xmlFiles, tableSuffix)
4. └─base::stopifnot(all(file.exists(file.path(xmlDir, xmlInfo$xml_filename))))
── Failure ('test_utilities.R:18:3'): getFailed ────────────────────────────────
nrow(dFailed) not equal to 1L.
1/1 mismatches
[1] 0 - 1 == -1
[ FAIL 2 | WARN 0 | SKIP 4 | PASS 154 ]
Error: Test failures
In addition: Warning message:
call dbDisconnect() when finished working with a connection
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
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