CRAN Package Check Results for Maintainer ‘Ruoyong Xu <ruoyong.xu at mail.utoronto.ca>’

Last updated on 2024-11-24 15:49:56 CET.

Package ERROR WARN NOTE OK
clrng 2 2 4
gpuR 3 1 4

Package clrng

Current CRAN status: ERROR: 2, NOTE: 2, OK: 4

Version: 0.0.5
Check: installed package size
Result: NOTE installed size is 11.5Mb sub-directories of 1Mb or more: libs 11.3Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.0.5
Check: examples
Result: ERROR Running examples in ‘clrng-Ex.R’ failed The error most likely occurred in: > ### Name: rnormGpu > ### Title: rnormGpu > ### Aliases: rnormGpu > > ### ** Examples > > library(clrng) > if (detectGPUs() >= 1) { + setContext(grep("gpu", listContexts()$device_type)[1]) + currentPlatform() + streams <- createStreamsGpu() + as.vector(rnormGpu(7, streams=streams)) + + getOption('clrng.Nglobal') + # use float precision and global size + as.matrix(rnormGpu(c(2,3), streams=streams))} else { + message("No GPU context available") + } Build Status = -2 ( Err = -11 ) Log: <program source>:22:6: warning: no previous prototype for function 'streamsToPrivate' void streamsToPrivate(__global int* streams, uint* g1, uint* g2, const int start){ ^ <program source>:30:6: warning: no previous prototype for function 'streamsFromPrivate' void streamsFromPrivate(__global int* streams, uint* g1, uint* g2, const int start){ ^ <program source>:38:6: warning: no previous prototype for function 'clrngMrg31k3pNextState' uint clrngMrg31k3pNextState(uint *g1, uint *g2) { ^ <program source>:97:14: error: call to '__cl_sqrt' is ambiguous temp = sqrt( -2.0*log(part[0]) ) * cos(part[1] + addForSine[get_local_id(1)] );// is cos for local0, sine for local1 ^~~~~~~~~~~~~~~~~~~~~~~~~ /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:4788:23: note: expanded from macro 'sqrt' #define sqrt(__x) __cl_sqrt(__x) ^~~~~~~~~ /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:4785:15: note: candidate function __CLFN_FD_1FD(__cl_sqrt); ^ /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:367:48: note: expanded from macro '__CLFN_FD_1FD' #define __CLFN_FD_1FD(name) float __OVERLOAD__ name(float x); \ ^ /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:4785:15: note: candidate function /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:368:21: note: expanded from macro '__CLFN_FD_1FD' float2 __OVERLOAD__ name(float2 x); \ ^ /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:4785:15: note: candidate function /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:369:21: note: expanded from macro '__CLFN_FD_1FD' float3 __OVERLOAD__ name(float3 x); \ ^ /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:4785:15: note: candidate function /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:370:21: note: expanded from macro '__CLFN_FD_1FD' float4 __OVERLOAD__ name(float4 x); \ ^ /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:4785:15: note: candidate function /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:371:21: note: expanded from macro '__CLFN_FD_1FD' float8 __OVERLOAD__ name(float8 x); \ ^ /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:4785:15: note: candidate function /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:372:22: note: expanded from macro '__CLFN_FD_1FD' float16 __OVERLOAD__ name(float16 x); ^ Sources: #define TWOPI 6.28318530717 #define PI_2 M_PI_2_F #define mrg31k3p_NORM_cl 4.6566126e-10 //TWOPI * mrg31k3p_NORM_cl #define TWOPI_mrg31k3p_NORM_cl 2.9258361e-09 #define Nrow 1 #define Ncol 7 #define NpadStreams 128 #define NpadCol 128 #define mrg31k3p_M1 2147483647 #define mrg31k3p_M2 2147462579 #define mrg31k3p_MASK12 511 #define mrg31k3p_MASK13 16777215 #define mrg31k3p_MASK2 65535 #define mrg31k3p_MULT2 21069 void streamsToPrivate(__global int* streams, uint* g1, uint* g2, const int start){ int Drow, Dcol, DrowStart; for(Drow = 0, DrowStart = start, Dcol = DrowStart + 3; Drow < 3; Drow++, DrowStart++, Dcol++){ g1[Drow] = streams[DrowStart]; g2[Drow] = streams[Dcol]; } } void streamsFromPrivate(__global int* streams, uint* g1, uint* g2, const int start){ int Drow, Dcol, DrowStart; for(Drow = 0,DrowStart = start, Dcol = DrowStart + 3; Drow < 3; Drow++, DrowStart++, Dcol++){ streams[DrowStart] = g1[Drow]; streams[Dcol] = g2[Drow]; } } uint clrngMrg31k3pNextState(uint *g1, uint *g2) { uint y1, y2; y1 = ((g1[1] & mrg31k3p_MASK12) << 22) + (g1[1] >> 9) + ((g1[2] & mrg31k3p_MASK13) << 7) + (g1[2] >> 24); if (y1 >= mrg31k3p_M1) y1 -= mrg31k3p_M1; y1 += g1[2]; if (y1 >= mrg31k3p_M1) y1 -= mrg31k3p_M1; g1[2] = g1[1]; g1[1] = g1[0]; g1[0] = y1; y1 = ((g2[0] & mrg31k3p_MASK2) << 15) + (mrg31k3p_MULT2 * (g2[0] >> 16)); if (y1 >= mrg31k3p_M2) y1 -= mrg31k3p_M2; y2 = ((g2[2] & mrg31k3p_MASK2) << 15) + (mrg31k3p_MULT2 * (g2[2] >> 16)); if (y2 >= mrg31k3p_M2) y2 -= mrg31k3p_M2; y2 += g2[2]; if (y2 >= mrg31k3p_M2) y2 -= mrg31k3p_M2; y2 += y1; if (y2 >= mrg31k3p_M2) y2 -= mrg31k3p_M2; g2[2] = g2[1]; g2[1] = g2[0]; g2[0] = y2; if (g1[0] <= g2[0]){ return (g1[0] - g2[0] + mrg31k3p_M1); } else { return(g1[0] - g2[0]); } } __kernel void mrg31k3pMatrix( __global int* streams, __global float* out){ const int index = get_global_id(0)*get_global_size(1) + get_global_id(1); int Drow, Dcol, DrowStart, Dentry, DrowBlock, DcolBlock, DrowInBounds; const int DrowStartInc = get_global_size(0) * NpadCol; uint g1[3], g2[3]; const int startvalue=index * NpadStreams; float temp; const float fact[2] = { mrg31k3p_NORM_cl, TWOPI * mrg31k3p_NORM_cl }; const float addForSine[2] = { 0.0, - PI_2 }; local float part[2]; streamsToPrivate(streams,g1,g2,startvalue); for(DrowBlock = 0, Drow=get_global_id(0), DrowStart = Drow * NpadCol; DrowBlock < Nrow; Drow += get_global_size(0), DrowBlock +=get_global_size(0), DrowStart += DrowStartInc) { DrowInBounds = Drow < Nrow; for(DcolBlock = 0, Dcol=get_global_id(1), Dentry = DrowStart + Dcol; DcolBlock < Ncol; DcolBlock += get_global_size(1), Dentry += get_global_size(1) ) { part[get_local_id(1)] = fact[get_local_id(1)] * clrngMrg31k3pNextState(g1, g2); barrier(CLK_LOCAL_MEM_FENCE); temp = sqrt( -2.0*log(part[0]) ) * cos(part[1] + addForSine[get_local_id(1)] );// is cos for local0, sine for local1 if(DrowInBounds) out[Dentry] = temp; barrier(CLK_LOCAL_MEM_FENCE); }//Dcol }//Drow streamsFromPrivate(streams,g1,g2,startvalue); }//kernel Error: ViennaCL: FATAL ERROR: CL_INVALID_PROGRAM_EXECUTABLE. If you think that this is a bug in ViennaCL, please report it at viennacl-support@lists.sourceforge.net and supply at least the following information: * Operating System * Which OpenCL implementation (AMD, NVIDIA, etc.) * ViennaCL version Many thanks in advance! Execution halted Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.0.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘createStreams.Rmd’ using knitr --- finished re-building ‘createStreams.Rmd’ --- re-building ‘fisher.sim.Rmd’ using knitr --- finished re-building ‘fisher.sim.Rmd’ --- re-building ‘random_numbers.Rmd’ using knitr Quitting from lines 63-96 [rnormGpu] (random_numbers.Rmd) Error: processing vignette 'random_numbers.Rmd' failed with diagnostics: ViennaCL: FATAL ERROR: CL_INVALID_PROGRAM_EXECUTABLE. If you think that this is a bug in ViennaCL, please report it at viennacl-support@lists.sourceforge.net and supply at least the following information: * Operating System * Which OpenCL implementation (AMD, NVIDIA, etc.) * ViennaCL version Many thanks in advance! --- failed re-building ‘random_numbers.Rmd’ SUMMARY: processing the following file failed: ‘random_numbers.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Package gpuR

Current CRAN status: WARN: 3, NOTE: 1, OK: 4

Version: 2.0.6
Check: installed package size
Result: NOTE installed size is 56.3Mb sub-directories of 1Mb or more: libs 53.8Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 2.0.6
Check: re-building of vignette outputs
Result: WARN Error(s) in re-building vignettes: --- re-building ‘custom_ocl_gpuR.Rnw’ using knitr Error: processing vignette 'custom_ocl_gpuR.Rnw' failed with diagnostics: Running 'texi2dvi' on 'custom_ocl_gpuR.tex' failed. LaTeX errors: ! Undefined control sequence. l.108 \hlsng {"__kernel void SAXPY(__global float* x, __global float* y, floa... ? ! Emergency stop. l.108 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘custom_ocl_gpuR.Rnw’ --- re-building ‘gpuR.Rnw’ using knitr Error: processing vignette 'gpuR.Rnw' failed with diagnostics: Running 'texi2dvi' on 'gpuR.tex' failed. LaTeX errors: ! Undefined control sequence. l.147 \hlkwd{install.packages}\hldef {(}\hlsng{"gpuR"}\hldef{)} ? ! Emergency stop. ! Emergency stop. l.147 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘gpuR.Rnw’ SUMMARY: processing the following files failed: ‘custom_ocl_gpuR.Rnw’ ‘gpuR.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64

Version: 2.0.6
Check: re-building of vignette outputs
Result: WARN Error(s) in re-building vignettes: --- re-building ‘custom_ocl_gpuR.Rnw’ using knitr Error: processing vignette 'custom_ocl_gpuR.Rnw' failed with diagnostics: Running 'texi2dvi' on 'custom_ocl_gpuR.tex' failed. LaTeX errors: ! Missing $ inserted. <inserted text> $ l.116 custom_ ocl_gpuR.R\end{kframe} ! Emergency stop. <inserted text> $ l.116 custom_ ocl_gpuR.R\end{kframe} ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘custom_ocl_gpuR.Rnw’ --- re-building ‘gpuR.Rnw’ using knitr --- finished re-building ‘gpuR.Rnw’ SUMMARY: processing the following file failed: ‘custom_ocl_gpuR.Rnw’ Error: Vignette re-building failed. Execution halted Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

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