CRAN Package Check Results for Maintainer ‘Szymon Nowakowski <s.nowakowski at mimuw.edu.pl>’

Last updated on 2024-12-31 09:49:47 CET.

Package	NOTE	OK
DMRnet	10	3
hclust1d		13

Package DMRnet

Current CRAN status: NOTE: 10, OK: 3

Version: 0.4.0
Check: Rd files
Result: NOTE checkRd: (-1) promoter.Rd:76: Lost braces; missing escapes or markup? 76 | It consists of E. coli promoter gene sequences starting at position -50 (p-50) and ending at position +7 (p7). Each of these 57 Fields is filled by one of {a, g, t, c}. The task is to recognize promoters, which are genetic regions which initiate the first step in the expression of adjacent genes (transcription). There are 53 promoters and 53 non-promoter sequences. | ^ checkRd: (-1) promoter.Rd:11: Lost braces; missing escapes or markup? 11 | \item{X1}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:12: Lost braces; missing escapes or markup? 12 | \item{X2}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:13: Lost braces; missing escapes or markup? 13 | \item{X3}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:14: Lost braces; missing escapes or markup? 14 | \item{X4}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:15: Lost braces; missing escapes or markup? 15 | \item{X5}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:16: Lost braces; missing escapes or markup? 16 | \item{X6}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:17: Lost braces; missing escapes or markup? 17 | \item{X7}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:18: Lost braces; missing escapes or markup? 18 | \item{X8}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:19: Lost braces; missing escapes or markup? 19 | \item{X9}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:20: Lost braces; missing escapes or markup? 20 | \item{X10}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:21: Lost braces; missing escapes or markup? 21 | \item{X11}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:22: Lost braces; missing escapes or markup? 22 | \item{X12}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:23: Lost braces; missing escapes or markup? 23 | \item{X13}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:24: Lost braces; missing escapes or markup? 24 | \item{X14}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:25: Lost braces; missing escapes or markup? 25 | \item{X15}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:26: Lost braces; missing escapes or markup? 26 | \item{X16}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:27: Lost braces; missing escapes or markup? 27 | \item{X17}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:28: Lost braces; missing escapes or markup? 28 | \item{X18}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:29: Lost braces; missing escapes or markup? 29 | \item{X19}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:30: Lost braces; missing escapes or markup? 30 | \item{X20}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:31: Lost braces; missing escapes or markup? 31 | \item{X21}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:32: Lost braces; missing escapes or markup? 32 | \item{X22}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:33: Lost braces; missing escapes or markup? 33 | \item{X23}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:34: Lost braces; missing escapes or markup? 34 | \item{X24}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:35: Lost braces; missing escapes or markup? 35 | \item{X25}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:36: Lost braces; missing escapes or markup? 36 | \item{X26}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:37: Lost braces; missing escapes or markup? 37 | \item{X27}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:38: Lost braces; missing escapes or markup? 38 | \item{X28}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:39: Lost braces; missing escapes or markup? 39 | \item{X29}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:40: Lost braces; missing escapes or markup? 40 | \item{X30}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:41: Lost braces; missing escapes or markup? 41 | \item{X31}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:42: Lost braces; missing escapes or markup? 42 | \item{X32}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:43: Lost braces; missing escapes or markup? 43 | \item{X33}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:44: Lost braces; missing escapes or markup? 44 | \item{X34}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:45: Lost braces; missing escapes or markup? 45 | \item{X35}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:46: Lost braces; missing escapes or markup? 46 | \item{X36}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:47: Lost braces; missing escapes or markup? 47 | \item{X37}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:48: Lost braces; missing escapes or markup? 48 | \item{X38}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:49: Lost braces; missing escapes or markup? 49 | \item{X39}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:50: Lost braces; missing escapes or markup? 50 | \item{X40}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:51: Lost braces; missing escapes or markup? 51 | \item{X41}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:52: Lost braces; missing escapes or markup? 52 | \item{X42}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:53: Lost braces; missing escapes or markup? 53 | \item{X43}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:54: Lost braces; missing escapes or markup? 54 | \item{X44}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:55: Lost braces; missing escapes or markup? 55 | \item{X45}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:56: Lost braces; missing escapes or markup? 56 | \item{X46}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:57: Lost braces; missing escapes or markup? 57 | \item{X47}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:58: Lost braces; missing escapes or markup? 58 | \item{X48}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:59: Lost braces; missing escapes or markup? 59 | \item{X49}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:60: Lost braces; missing escapes or markup? 60 | \item{X50}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:61: Lost braces; missing escapes or markup? 61 | \item{X51}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:62: Lost braces; missing escapes or markup? 62 | \item{X52}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:63: Lost braces; missing escapes or markup? 63 | \item{X53}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:64: Lost braces; missing escapes or markup? 64 | \item{X54}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:65: Lost braces; missing escapes or markup? 65 | \item{X55}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:66: Lost braces; missing escapes or markup? 66 | \item{X56}{Sequence; filled by one of {a, g, t, c}.} | ^ checkRd: (-1) promoter.Rd:67: Lost braces; missing escapes or markup? 67 | \item{X57}{Sequence; filled by one of {a, g, t, c}.}} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package hclust1d

Current CRAN status: OK: 13