CRAN Package Check Results for Package searchAnalyzeR

Last updated on 2025-11-11 15:50:47 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.0	15.63	136.38	152.01	ERROR
r-devel-linux-x86_64-debian-gcc	0.1.0	8.60	103.06	111.66	OK
r-devel-linux-x86_64-fedora-clang	0.1.0	28.00	218.19	246.19	OK
r-devel-linux-x86_64-fedora-gcc	0.1.0	33.00	214.15	247.15	OK
r-devel-windows-x86_64	0.1.0	17.00	171.00	188.00	OK
r-patched-linux-x86_64	0.1.0	14.92	138.52	153.44	OK
r-release-linux-x86_64	0.1.0	13.71	137.89	151.60	OK
r-release-macos-arm64	0.1.0	5.00	78.00	83.00	OK
r-release-macos-x86_64	0.1.0	12.00	145.00	157.00	OK
r-release-windows-x86_64	0.1.0	16.00	126.00	142.00	ERROR
r-oldrel-macos-arm64	0.1.0	6.00	87.00	93.00	OK
r-oldrel-macos-x86_64	0.1.0	13.00	149.00	162.00	OK
r-oldrel-windows-x86_64	0.1.0	22.00	211.00	233.00	OK

Check Details

Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Comparing_Search_Strategies_with_searchAnalyzeR.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Comparing_Search_Strategies_with_searchAnalyzeR.Rmd’ --- re-building ‘Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd’ using rmarkdown Quitting from Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd:106-117 [execute-search] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `read_xml.raw()`: ! Premature end of data in tag PubmedArticleSet line 3 [77] --- Backtrace: ▆ 1. └─searchAnalyzeR::search_pubmed(...) 2. ├─xml2::read_xml(abstracts) 3. └─xml2:::read_xml.character(abstracts) 4. └─xml2:::read_xml.raw(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' failed with diagnostics: Premature end of data in tag PubmedArticleSet line 3 [77] --- failed re-building ‘Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd’ SUMMARY: processing the following file failed: ‘Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Comparing_Search_Strategies_with_searchAnalyzeR.Rmd' using rmarkdown Quitting from Comparing_Search_Strategies_with_searchAnalyzeR.Rmd:130-150 [execute_searches] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! 1: Opening and ending tag mismatch: br line 47 and p 2: Opening and ending tag mismatch: br line 47 and section 3: Opening and ending tag mismatch: p line 44 and main 4: Opening and ending tag mismatch: br line 180 and a 5: Opening and ending tag mismatch: a line 180 and p 6: Opening and ending tag mismatch: br line 179 and div 7: Opening and ending tag mismatch: br line 185 and p 8: Opening and ending tag mismatch: br line 184 and div 9: Opening and ending tag mismatch: br line 190 and p 10: Opening and ending tag mismatch: br line 189 and div 11: Opening and ending tag mismatch: p line 189 and div 12: Opening and ending tag mismatch: p line 184 and section 13: Opening and ending tag mismatch: div line 183 and footer 14: Opening and ending tag mismatch: p line 179 and body 15: Opening and ending tag mismatch: div line 178 and html --- Backtrace: ▆ 1. ├─searchAnalyzeR::search_pubmed(...) 2. │ └─rentrez::entrez_search(...) 3. │ └─rentrez:::parse_response(response, retmode) 4. │ └─XML::xmlTreeParse(x, useInternalNodes = TRUE) 5. └─XML (local) `<fn>`(`<chr>`) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Comparing_Search_Strategies_with_searchAnalyzeR.Rmd' failed with diagnostics: 1: Opening and ending tag mismatch: br line 47 and p 2: Opening and ending tag mismatch: br line 47 and section 3: Opening and ending tag mismatch: p line 44 and main 4: Opening and ending tag mismatch: br line 180 and a 5: Opening and ending tag mismatch: a line 180 and p 6: Opening and ending tag mismatch: br line 179 and div 7: Opening and ending tag mismatch: br line 185 and p 8: Opening and ending tag mismatch: br line 184 and div 9: Opening and ending tag mismatch: br line 190 and p 10: Opening and ending tag mismatch: br line 189 and div 11: Opening and ending tag mismatch: p line 189 and div 12: Opening and ending tag mismatch: p line 184 and section 13: Opening and ending tag mismatch: div line 183 and footer 14: Opening and ending tag mismatch: p line 179 and body 15: Opening and ending tag mismatch: div line 178 and html --- failed re-building 'Comparing_Search_Strategies_with_searchAnalyzeR.Rmd' --- re-building 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' using rmarkdown Quitting from Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd:106-117 [execute-search] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! 1: Opening and ending tag mismatch: br line 47 and p 2: Opening and ending tag mismatch: br line 47 and section 3: Opening and ending tag mismatch: p line 44 and main 4: Opening and ending tag mismatch: br line 180 and a 5: Opening and ending tag mismatch: a line 180 and p 6: Opening and ending tag mismatch: br line 179 and div 7: Opening and ending tag mismatch: br line 185 and p 8: Opening and ending tag mismatch: br line 184 and div 9: Opening and ending tag mismatch: br line 190 and p 10: Opening and ending tag mismatch: br line 189 and div 11: Opening and ending tag mismatch: p line 189 and div 12: Opening and ending tag mismatch: p line 184 and section 13: Opening and ending tag mismatch: div line 183 and footer 14: Opening and ending tag mismatch: p line 179 and body 15: Opening and ending tag mismatch: div line 178 and html --- Backtrace: ▆ 1. ├─searchAnalyzeR::search_pubmed(...) 2. │ └─rentrez::entrez_search(...) 3. │ └─rentrez:::parse_response(response, retmode) 4. │ └─XML::xmlTreeParse(x, useInternalNodes = TRUE) 5. └─XML (local) `<fn>`(`<chr>`) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' failed with diagnostics: 1: Opening and ending tag mismatch: br line 47 and p 2: Opening and ending tag mismatch: br line 47 and section 3: Opening and ending tag mismatch: p line 44 and main 4: Opening and ending tag mismatch: br line 180 and a 5: Opening and ending tag mismatch: a line 180 and p 6: Opening and ending tag mismatch: br line 179 and div 7: Opening and ending tag mismatch: br line 185 and p 8: Opening and ending tag mismatch: br line 184 and div 9: Opening and ending tag mismatch: br line 190 and p 10: Opening and ending tag mismatch: br line 189 and div 11: Opening and ending tag mismatch: p line 189 and div 12: Opening and ending tag mismatch: p line 184 and section 13: Opening and ending tag mismatch: div line 183 and footer 14: Opening and ending tag mismatch: p line 179 and body 15: Opening and ending tag mismatch: div line 178 and html --- failed re-building 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' SUMMARY: processing the following files failed: 'Comparing_Search_Strategies_with_searchAnalyzeR.Rmd' 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-release-windows-x86_64