CRAN Package Check Results for Maintainer ‘Sukalpo Saha <sukalpo.saha at pfizer.com>’

Last updated on 2024-09-01 05:49:59 CEST.

Package	ERROR	OK
admiralvaccine	3	10

Package admiralvaccine

Current CRAN status: ERROR: 3, OK: 10

Version: 0.2.0
Check: tests
Result: ERROR Running ‘testthat.R’ [7s/9s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(admiralvaccine) > > test_check("admiralvaccine") [1] "VAX01DT" [1] "VAX02DT" [1] "VAX03DT" [ FAIL 1 | WARN 1 | SKIP 0 | PASS 35 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-derive_vars_merged_vaccine.R:165:3'): derive_vars_merged_vaccine Test 2: Check if supp datasets merged properly if they exist ── Differences found between the objects! A summary is given below. There are columns in BASE that are not in COMPARE !! All rows are shown in table below ========== COLUMNS ---------- IDVARVAL ---------- [ FAIL 1 | WARN 1 | SKIP 0 | PASS 35 ] Error: Test failures Execution halted Flavor: r-release-linux-x86_64

Version: 0.3.0
Check: running R code from vignettes
Result: ERROR Errors in running code in vignettes: when running code in ‘adce.Rmd’ ... |ABC-1001 |2021-11-03 |2021-11-04 |2021-11-04 | 2| 2| 1|2021-11-03 | 2| |ABC-1001 |2021-11-03 |2021-11-04 |2021-11-04 | 2| 2| 1|2021-11-03 | 2| > adce <- adce %>% mutate(ASEV = CESEV, ASEVN = as.integer(factor(ASEV, + levels = c("MILD", "MODERATE", "SEVERE", "DEATH THREATENING")))) %>% + .... [TRUNCATED] When sourcing ‘adce.R’: Error: could not find function "is_named" Execution halted when running code in ‘adis.Rmd’ ... |ABC-1002 | 10|J0033VN Antibody |3 | 3.0|titer |NA |S+ | 2| |ABC-1002 | 10|I0019NT Antibody |NA | NA|NA |NA |UNKNOWN | 3| > adis <- restrict_derivation(adis, derivation = derive_var_extreme_flag, + args = params(by_vars = exprs(STUDYID, USUBJID, PARAMN), + o .... [TRUNCATED] When sourcing ‘adis.R’: Error: could not find function "is_named" Execution halted ‘adce.Rmd’ using ‘UTF-8’... failed ‘adface.Rmd’ using ‘UTF-8’... [2s/2s] OK ‘adis.Rmd’ using ‘UTF-8’... failed ‘admiralvaccine.Rmd’ using ‘UTF-8’... [1s/1s] OK ‘adsl.Rmd’ using ‘UTF-8’... [2s/2s] OK Flavor: r-oldrel-macos-arm64

Version: 0.3.0
Check: re-building of vignette outputs
Result: NOTE Error(s) in re-building vignettes: --- re-building ‘adce.Rmd’ using rmarkdown Quitting from lines 162-179 [unnamed-chunk-10] (adce.Rmd) Error: processing vignette 'adce.Rmd' failed with diagnostics: could not find function "is_named" --- failed re-building ‘adce.Rmd’ --- re-building ‘adface.Rmd’ using rmarkdown --- finished re-building ‘adface.Rmd’ --- re-building ‘adis.Rmd’ using rmarkdown Quitting from lines 444-480 [unnamed-chunk-13] (adis.Rmd) Error: processing vignette 'adis.Rmd' failed with diagnostics: could not find function "is_named" --- failed re-building ‘adis.Rmd’ --- re-building ‘admiralvaccine.Rmd’ using rmarkdown --- finished re-building ‘admiralvaccine.Rmd’ --- re-building ‘adsl.Rmd’ using rmarkdown --- finished re-building ‘adsl.Rmd’ SUMMARY: processing the following files failed: ‘adce.Rmd’ ‘adis.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.3.0
Check: running R code from vignettes
Result: ERROR Errors in running code in vignettes: when running code in ‘adce.Rmd’ ... |ABC-1001 |2021-11-03 |2021-11-04 |2021-11-04 | 2| 2| 1|2021-11-03 | 2| |ABC-1001 |2021-11-03 |2021-11-04 |2021-11-04 | 2| 2| 1|2021-11-03 | 2| > adce <- adce %>% mutate(ASEV = CESEV, ASEVN = as.integer(factor(ASEV, + levels = c("MILD", "MODERATE", "SEVERE", "DEATH THREATENING")))) %>% + .... [TRUNCATED] When sourcing ‘adce.R’: Error: could not find function "is_named" Execution halted when running code in ‘adis.Rmd’ ... |ABC-1002 | 10|J0033VN Antibody |3 | 3.0|titer |NA |S+ | 2| |ABC-1002 | 10|I0019NT Antibody |NA | NA|NA |NA |UNKNOWN | 3| > adis <- restrict_derivation(adis, derivation = derive_var_extreme_flag, + args = params(by_vars = exprs(STUDYID, USUBJID, PARAMN), + o .... [TRUNCATED] When sourcing ‘adis.R’: Error: could not find function "is_named" Execution halted ‘adce.Rmd’ using ‘UTF-8’... failed ‘adface.Rmd’ using ‘UTF-8’... [4s/5s] OK ‘adis.Rmd’ using ‘UTF-8’... failed ‘admiralvaccine.Rmd’ using ‘UTF-8’... [1s/1s] OK ‘adsl.Rmd’ using ‘UTF-8’... [2s/3s] OK Flavor: r-oldrel-macos-x86_64