Last updated on 2024-09-01 05:49:59 CEST.
Package | ERROR | OK |
---|---|---|
admiralvaccine | 3 | 10 |
Current CRAN status: ERROR: 3, OK: 10
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(admiralvaccine)
>
> test_check("admiralvaccine")
[1] "VAX01DT"
[1] "VAX02DT"
[1] "VAX03DT"
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 35 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-derive_vars_merged_vaccine.R:165:3'): derive_vars_merged_vaccine Test 2: Check if supp datasets merged
properly if they exist ──
Differences found between the objects!
A summary is given below.
There are columns in BASE that are not in COMPARE !!
All rows are shown in table below
==========
COLUMNS
----------
IDVARVAL
----------
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 35 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.3.0
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘adce.Rmd’
...
|ABC-1001 |2021-11-03 |2021-11-04 |2021-11-04 | 2| 2| 1|2021-11-03 | 2|
|ABC-1001 |2021-11-03 |2021-11-04 |2021-11-04 | 2| 2| 1|2021-11-03 | 2|
> adce <- adce %>% mutate(ASEV = CESEV, ASEVN = as.integer(factor(ASEV,
+ levels = c("MILD", "MODERATE", "SEVERE", "DEATH THREATENING")))) %>%
+ .... [TRUNCATED]
When sourcing ‘adce.R’:
Error: could not find function "is_named"
Execution halted
when running code in ‘adis.Rmd’
...
|ABC-1002 | 10|J0033VN Antibody |3 | 3.0|titer |NA |S+ | 2|
|ABC-1002 | 10|I0019NT Antibody |NA | NA|NA |NA |UNKNOWN | 3|
> adis <- restrict_derivation(adis, derivation = derive_var_extreme_flag,
+ args = params(by_vars = exprs(STUDYID, USUBJID, PARAMN),
+ o .... [TRUNCATED]
When sourcing ‘adis.R’:
Error: could not find function "is_named"
Execution halted
‘adce.Rmd’ using ‘UTF-8’... failed
‘adface.Rmd’ using ‘UTF-8’... [2s/2s] OK
‘adis.Rmd’ using ‘UTF-8’... failed
‘admiralvaccine.Rmd’ using ‘UTF-8’... [1s/1s] OK
‘adsl.Rmd’ using ‘UTF-8’... [2s/2s] OK
Flavor: r-oldrel-macos-arm64
Version: 0.3.0
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
--- re-building ‘adce.Rmd’ using rmarkdown
Quitting from lines 162-179 [unnamed-chunk-10] (adce.Rmd)
Error: processing vignette 'adce.Rmd' failed with diagnostics:
could not find function "is_named"
--- failed re-building ‘adce.Rmd’
--- re-building ‘adface.Rmd’ using rmarkdown
--- finished re-building ‘adface.Rmd’
--- re-building ‘adis.Rmd’ using rmarkdown
Quitting from lines 444-480 [unnamed-chunk-13] (adis.Rmd)
Error: processing vignette 'adis.Rmd' failed with diagnostics:
could not find function "is_named"
--- failed re-building ‘adis.Rmd’
--- re-building ‘admiralvaccine.Rmd’ using rmarkdown
--- finished re-building ‘admiralvaccine.Rmd’
--- re-building ‘adsl.Rmd’ using rmarkdown
--- finished re-building ‘adsl.Rmd’
SUMMARY: processing the following files failed:
‘adce.Rmd’ ‘adis.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.3.0
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘adce.Rmd’
...
|ABC-1001 |2021-11-03 |2021-11-04 |2021-11-04 | 2| 2| 1|2021-11-03 | 2|
|ABC-1001 |2021-11-03 |2021-11-04 |2021-11-04 | 2| 2| 1|2021-11-03 | 2|
> adce <- adce %>% mutate(ASEV = CESEV, ASEVN = as.integer(factor(ASEV,
+ levels = c("MILD", "MODERATE", "SEVERE", "DEATH THREATENING")))) %>%
+ .... [TRUNCATED]
When sourcing ‘adce.R’:
Error: could not find function "is_named"
Execution halted
when running code in ‘adis.Rmd’
...
|ABC-1002 | 10|J0033VN Antibody |3 | 3.0|titer |NA |S+ | 2|
|ABC-1002 | 10|I0019NT Antibody |NA | NA|NA |NA |UNKNOWN | 3|
> adis <- restrict_derivation(adis, derivation = derive_var_extreme_flag,
+ args = params(by_vars = exprs(STUDYID, USUBJID, PARAMN),
+ o .... [TRUNCATED]
When sourcing ‘adis.R’:
Error: could not find function "is_named"
Execution halted
‘adce.Rmd’ using ‘UTF-8’... failed
‘adface.Rmd’ using ‘UTF-8’... [4s/5s] OK
‘adis.Rmd’ using ‘UTF-8’... failed
‘admiralvaccine.Rmd’ using ‘UTF-8’... [1s/1s] OK
‘adsl.Rmd’ using ‘UTF-8’... [2s/3s] OK
Flavor: r-oldrel-macos-x86_64
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