CRAN Package Check Results for Package summata

Last updated on 2026-10-24 17:51:45 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.13.0	24.29	540.12	564.41	OK
r-devel-linux-x86_64-debian-gcc	0.13.0	14.80	339.51	354.31	ERROR
r-devel-linux-x86_64-fedora-clang	0.13.0	19.00	373.06	392.06	OK
r-devel-linux-x86_64-fedora-gcc	0.13.0	16.00	286.85	302.85	OK
r-devel-windows-x86_64	0.12.0	26.00	550.00	576.00	OK
r-patched-linux-x86_64	0.13.0	27.31	470.73	498.04	OK
r-release-linux-x86_64	0.12.0	21.01	590.77	611.78	OK
r-release-macos-arm64	0.13.0	5.00	118.00	123.00	OK
r-release-macos-x86_64	0.13.0	16.00	643.00	659.00	OK
r-release-windows-x86_64	0.13.0	25.00	444.00	469.00	OK
r-oldrel-macos-arm64	0.13.0	6.00	152.00	158.00	OK
r-oldrel-macos-x86_64	0.13.0	17.00	577.00	594.00	OK
r-oldrel-windows-x86_64	0.13.0	36.00	471.00	507.00	OK

Check Details

Version: 0.13.0
Check: tests
Result: ERROR Running ‘testthat.R’ [109s/117s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the testthat infrastructure. > # Run all tests with: testthat::test_local() > > library(testthat) > library(summata) > > test_check("summata") Saving _problems/test-forest-aliased-188.R Saving _problems/test-forest-aliased-189.R Saving _problems/test-forest-aliased-190.R Saving _problems/test-forest-aliased-191.R Saving _problems/test-forest-aliased-194.R Saving _problems/test-forest-aliased-209.R Saving _problems/test-forest-aliased-210.R Saving _problems/test-forest-aliased-217.R Saving _problems/test-forest-aliased-237.R Saving _problems/test-forest-aliased-243.R Saving _problems/test-forest-aliased-258.R Saving _problems/test-forest-aliased-260.R Saving _problems/test-forest-aliased-261.R Saving _problems/test-forest-aliased-264.R [ FAIL 14 | WARN 4 | SKIP 33 | PASS 2249 ] ══ Skipped tests (33) ══════════════════════════════════════════════════════════ • Cairo PDF device is usable here (1): 'test-forestsave.R:188:5' • On CRAN (32): 'test-compfit.R:173:5', 'test-compfit.R:210:5', 'test-compfit.R:243:5', 'test-compfit.R:276:5', 'test-compfit.R:311:5', 'test-compfit.R:763:5', 'test-compfit.R:814:5', 'test-compfit.R:883:5', 'test-compfit.R:999:5', 'test-fit.R:13:1', 'test-forest.R:15:1', 'test-fullfit.R:13:1', 'test-multivariate.R:13:1', 'test-table2.R:147:5', 'test-table2.R:162:5', 'test-table2.R:184:5', 'test-table2.R:199:5', 'test-table2.R:213:5', 'test-table2.R:227:5', 'test-table2.R:262:5', 'test-table2.R:278:5', 'test-table2.R:294:5', 'test-table2.R:310:5', 'test-table2.R:326:5', 'test-table2.R:343:5', 'test-table2.R:365:5', 'test-table2.R:393:5', 'test-table2.R:408:5', 'test-table2.R:428:5', 'test-table2.R:445:5', 'test-table2.R:470:5', 'test-table2.R:490:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-forest-aliased.R:188:5'): a factor with several aliased levels is shown against its effective reference ── Expected `stage$group` to be identical to `c("III", "II")`. Differences: Lengths differ: 1 is not 2 ── Failure ('test-forest-aliased.R:189:5'): a factor with several aliased levels is shown against its effective reference ── Expected `stage$reference` to be identical to `c("reference", "")`. Differences: target is NULL, current is character ── Failure ('test-forest-aliased.R:190:5'): a factor with several aliased levels is shown against its effective reference ── Expected `stage$n[1]` to equal `sum(df$stage == "III")`. Differences: 1/1 mismatches [1] 263 - 241 == 22 ── Failure ('test-forest-aliased.R:191:5'): a factor with several aliased levels is shown against its effective reference ── Expected `stage$coefficient[2]` to equal `unname(stats::coef(refit)["stageII"])`. Differences: 1/1 mismatches [1] NA - -0.455 == NA ── Failure ('test-forest-aliased.R:194:5'): a factor with several aliased levels is shown against its effective reference ── Expected `tbl$level[tbl$var == "stage"]` to be identical to `c("III", "II")`. Differences: Lengths differ: 1 is not 2 ── Failure ('test-forest-aliased.R:209:5'): the effective reference may be the last of the aliased levels ── Expected `stage$group` to be identical to `c("IV", "III")`. Differences: Lengths differ: 1 is not 2 ── Failure ('test-forest-aliased.R:210:5'): the effective reference may be the last of the aliased levels ── Expected `stage$reference` to be identical to `c("reference", "")`. Differences: target is NULL, current is character ── Failure ('test-forest-aliased.R:217:5'): the effective reference may be the last of the aliased levels ── Expected `raw_strat$group[raw_strat$variable == "stage"]` to be identical to `c("IV", "III")`. Differences: Lengths differ: 1 is not 2 ── Failure ('test-forest-aliased.R:237:5'): a factor estimated against no single level is shown without a reference ── `raw <- m2dt(df, model)` produced unexpected warnings. Expected match: not estimated against a single Actual values: * The reference level of 'pair' could not be determined: its first level has no observations and several of its levels are aliased. No reference level is shown. ── Failure ('test-forest-aliased.R:241:5'): a factor estimated against no single level is shown without a reference ── `tbl <- attr(suppressMessages(coxforest(model, data = df)), "table_data")` produced unexpected warnings. Expected match: not estimated against a single Actual values: * The reference level of 'pair' could not be determined: its first level has no observations and several of its levels are aliased. No reference level is shown. ── Failure ('test-forest-aliased.R:258:5'): the effective reference is found for a factor in an interaction ── Expected `raw <- m2dt(df, model)` not to throw any warnings. Actually got a <simpleWarning> with message: The reference level of 'stage' could not be determined: its first level has no observations and several of its levels are aliased. No reference level is shown. ── Failure ('test-forest-aliased.R:260:5'): the effective reference is found for a factor in an interaction ── Expected `stage$group` to be identical to `c("III", "II")`. Differences: Lengths differ: 1 is not 2 ── Failure ('test-forest-aliased.R:261:5'): the effective reference is found for a factor in an interaction ── Expected `stage$reference` to be identical to `c("reference", "")`. Differences: Lengths differ: 1 is not 2 ── Failure ('test-forest-aliased.R:264:5'): the effective reference is found for a factor in an interaction ── Expected `tbl$level[tbl$var == "stage"]` to be identical to `c("III", "II")`. Differences: Lengths differ: 1 is not 2 [ FAIL 14 | WARN 4 | SKIP 33 | PASS 2249 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc