CRAN Package Check Results for Maintainer ‘Daniel Sussman <sussman at bu.edu>’

Last updated on 2024-11-21 19:53:18 CET.

Package	ERROR	OK
iGraphMatch	1	12

Package iGraphMatch

Current CRAN status: ERROR: 1, OK: 12

Version: 2.0.5
Check: examples
Result: ERROR Running examples in ‘iGraphMatch-Ex.R’ failed The error most likely occurred in: > ### Name: center_graph > ### Title: Center adjacency matrix > ### Aliases: center_graph > > ### ** Examples > > A <- sample_correlated_gnp_pair(n = 10, corr = .5, p = .5)$graph1 > center_graph(A, scheme = "naive") 10 x 10 sparse Matrix of class "dgCMatrix" [1,] . 1 . . . 1 . 1 1 . [2,] 1 . 1 . 1 1 1 . 1 . [3,] . 1 . . 1 1 . . 1 . [4,] . . . . . . . . . 1 [5,] . 1 1 . . . 1 1 1 . [6,] 1 1 1 . . . 1 1 1 1 [7,] . 1 . . 1 1 . . 1 1 [8,] 1 . . . 1 1 . . . 1 [9,] 1 1 1 . 1 1 1 . . . [10,] . . . 1 . 1 1 1 . . > center_graph(A, scheme = "center") Sparse part 10 x 10 sparse Matrix of class "dgCMatrix" [1,] . 2 . . . 2 . 2 2 . [2,] 2 . 2 . 2 2 2 . 2 . [3,] . 2 . . 2 2 . . 2 . [4,] . . . . . . . . . 2 [5,] . 2 2 . . . 2 2 2 . [6,] 2 2 2 . . . 2 2 2 2 [7,] . 2 . . 2 2 . . 2 2 [8,] 2 . . . 2 2 . . . 2 [9,] 2 2 2 . 2 2 2 . . . [10,] . . . 2 . 2 2 2 . . plus left factor 10 x 1 Matrix of class "dgeMatrix" [,1] [1,] -1 [2,] -1 [3,] -1 [4,] -1 [5,] -1 [6,] -1 [7,] -1 [8,] -1 [9,] -1 [10,] -1 times right factor transpose 10 x 1 Matrix of class "dgeMatrix" [,1] [1,] 1 [2,] 1 [3,] 1 [4,] 1 [5,] 1 [6,] 1 [7,] 1 [8,] 1 [9,] 1 [10,] 1 > center_graph(A, scheme = 2) Error in irlba::irlba(a, rank) : function 'as_cholmod_sparse' not provided by package 'Matrix' Calls: center_graph -> splr -> splr -> <Anonymous> Execution halted Flavor: r-oldrel-macos-arm64

Version: 2.0.5
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [17s/18s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(iGraphMatch) Thanks for using iGraphMatch! We'd love to get feedback on what you like, what you don't like, and how you are using the package. See ?iGraphMatch for contact information. > > test_check("iGraphMatch") Sparse part 10 x 10 sparse Matrix of class "dgCMatrix" [1,] . . -0.77 . 1.4000 -0.15 . -0.32 -0.0076 0.55 [2,] -0.46 . -1.10 1.30 0.3400 . -0.160 . . -1.20 [3,] -1.10 . . . 0.0069 . . . . 0.56 [4,] -1.10 -1.10 . . . -0.37 . . 1.6000 . [5,] -0.28 . . . . . . . -0.1800 . [6,] -1.40 -0.97 -0.17 . . -1.00 -0.035 -0.19 -1.3000 2.50 [7,] . 0.85 . . -0.6700 -0.17 0.660 -0.72 . . [8,] -1.40 . -0.47 -0.99 1.8000 0.70 . -0.58 . . [9,] -0.86 . 0.26 . 0.6500 . . -1.80 . 2.10 [10,] . . . 1.60 . -0.40 -0.500 1.40 -0.5200 . plus left factor 10 x 3 Matrix of class "dgeMatrix" [,1] [,2] [,3] [1,] 0.11613577 0.3100942 0.9830440 [2,] 0.30302180 0.7425694 0.6392046 [3,] 0.47880269 0.6389113 0.6607546 [4,] 0.34483055 0.9925160 0.5283594 [5,] 0.60071414 0.1282698 0.3174938 [6,] 0.07608332 0.8832396 0.7678555 [7,] 0.95599261 0.8100834 0.5263085 [8,] 0.02220682 0.8218512 0.7323019 [9,] 0.84171063 0.8347027 0.3076657 [10,] 0.63244245 0.7327322 0.4041733 times right factor transpose 10 x 3 Matrix of class "dgeMatrix" [,1] [,2] [,3] [1,] 0.2044024 0.47922247 0.5089206 [2,] 0.9856331 0.85031192 0.4944386 [3,] 0.5663108 0.42233068 0.7970529 [4,] 0.2803751 0.03139212 0.5669589 [5,] 0.1850557 0.25814665 0.1066968 [6,] 0.7580614 0.33484473 0.8076484 [7,] 0.5667813 0.13354967 0.5671121 [8,] 0.9321736 0.49954639 0.2122409 [9,] 0.6386933 0.80213563 0.7495793 [10,] 0.7007481 0.33715324 0.3072184 Sparse part 10 x 10 sparse Matrix of class "dgCMatrix" [1,] . . -0.77 . 1.4000 -0.15 . -0.32 -0.0076 0.55 [2,] -0.46 . -1.10 1.30 0.3400 . -0.160 . . -1.20 [3,] -1.10 . . . 0.0069 . . . . 0.56 [4,] -1.10 -1.10 . . . -0.37 . . 1.6000 . [5,] -0.28 . . . . . . . -0.1800 . [6,] -1.40 -0.97 -0.17 . . -1.00 -0.035 -0.19 -1.3000 2.50 [7,] . 0.85 . . -0.6700 -0.17 0.660 -0.72 . . [8,] -1.40 . -0.47 -0.99 1.8000 0.70 . -0.58 . . [9,] -0.86 . 0.26 . 0.6500 . . -1.80 . 2.10 [10,] . . . 1.60 . -0.40 -0.500 1.40 -0.5200 . plus left factor 10 x 3 Matrix of class "dgeMatrix" [,1] [,2] [,3] [1,] 0.11613577 0.3100942 0.9830440 [2,] 0.30302180 0.7425694 0.6392046 [3,] 0.47880269 0.6389113 0.6607546 [4,] 0.34483055 0.9925160 0.5283594 [5,] 0.60071414 0.1282698 0.3174938 [6,] 0.07608332 0.8832396 0.7678555 [7,] 0.95599261 0.8100834 0.5263085 [8,] 0.02220682 0.8218512 0.7323019 [9,] 0.84171063 0.8347027 0.3076657 [10,] 0.63244245 0.7327322 0.4041733 times right factor transpose 10 x 3 Matrix of class "dgeMatrix" [,1] [,2] [,3] [1,] 0.2044024 0.47922247 0.5089206 [2,] 0.9856331 0.85031192 0.4944386 [3,] 0.5663108 0.42233068 0.7970529 [4,] 0.2803751 0.03139212 0.5669589 [5,] 0.1850557 0.25814665 0.1066968 [6,] 0.7580614 0.33484473 0.8076484 [7,] 0.5667813 0.13354967 0.5671121 [8,] 0.9321736 0.49954639 0.2122409 [9,] 0.6386933 0.80213563 0.7495793 [10,] 0.7007481 0.33715324 0.3072184 splrMatrix Dimension: 10 10 Lower rank matrix is rank: 3[ FAIL 2 | WARN 4 | SKIP 25 | PASS 229 ] ══ Skipped tests (25) ══════════════════════════════════════════════════════════ • On CRAN (25): 'test-Isorank.R:16:3', 'test-Isorank.R:23:3', 'test-Isorank.R:48:3', 'test-customized_gm_method.R:32:3', 'test-gm_PATH.R:32:3', 'test-gm_expand_when_stuck.R:11:3', 'test-graph_match_class.R:22:3', 'test-init_start.R:30:3', 'test-init_start.R:37:5', 'test-init_start.R:50:3', 'test-init_start.R:57:3', 'test-init_start.R:63:5', 'test-init_start.R:88:3', 'test-init_start.R:112:5', 'test-init_start.R:162:5', 'test-lap.R:61:5', 'test-perco.R:12:3', 'test-perco.R:20:3', 'test-perco.R:26:3', 'test-perco.R:38:3', 'test-perco.R:51:3', 'test-start.R:26:3', 'test-umeyama.R:17:3', 'test-umeyama.R:34:3', 'test-umeyama.R:51:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-center-graph.R:49:3'): use splr ──────────────────────────────── Error in `irlba::irlba(A, ndim)`: function 'as_cholmod_sparse' not provided by package 'Matrix' Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-center-graph.R:49:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::nrow(center_graph(A, scheme = 2, use_splr = FALSE)) 5. └─iGraphMatch::center_graph(A, scheme = 2, use_splr = FALSE) 6. └─iGraphMatch:::low_rank_approx(A[], r) 7. └─irlba::irlba(A, ndim) ── Error ('test-center-graph.R:61:3'): padding ───────────────────────────────── Error in `irlba::irlba(a, rank)`: function 'as_cholmod_sparse' not provided by package 'Matrix' Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-center-graph.R:61:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::nrow(...) 5. ├─iGraphMatch::pad(...) 6. │ └─methods::is(m, "splrMatrix") 7. └─iGraphMatch::center_graph(A, scheme = 2, use_splr = TRUE) 8. ├─iGraphMatch::splr(x = A[], a = -A[], rank = r, factorize = TRUE) 9. └─iGraphMatch::splr(x = A[], a = -A[], rank = r, factorize = TRUE) 10. └─irlba::irlba(a, rank) [ FAIL 2 | WARN 4 | SKIP 25 | PASS 229 ] Error: Test failures Execution halted Flavor: r-oldrel-macos-arm64